View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4685-Insertion-2 (Length: 786)
Name: NF4685-Insertion-2
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685-Insertion-2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 34 - 506
Target Start/End: Original strand, 34511662 - 34512134
Alignment:
| Q |
34 |
tttattctagatcttttagggaatttgtgggtgaagttaaattgagggtttttatttgaggtttgggttttggtggaggaaataatgagttatagttgct |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
34511662 |
tttattctagatcttttagggaatttgtgggtgaagttaaattgagggtttttatttgaggtttgggttttggtggaggaaatagtgagttacagttgct |
34511761 |
T |
|
| Q |
134 |
ggttagagtagcagcttgttctttgtgaattttgagttagtgtaatgacgctttgacaatttggaaagttgatgcagtgttggtttgattttgataagtt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34511762 |
ggttagagtagcagcttgttctttgtgaattttgagttagtgtaatgacgctttgacaatttggaaagttgatgcagcgttggtttgattttgataagtt |
34511861 |
T |
|
| Q |
234 |
tatacgtggttttaaggtgatcgatgataaagttgaattcatttctgctattataattttgaacatctttgccttcatgttagtgttgccgattgcagat |
333 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34511862 |
tatatgtggttttaaggcgatcgatgataaagttgaattcatttttgctcttataattttgaacatctttgccttcatgttagtgttgccgatcgcagat |
34511961 |
T |
|
| Q |
334 |
tgcggaaaatagttgtctacatcgatgctatatgacaatactttatgctaattgtgtttgcataataatagcattctgttaaaattccactatgctatga |
433 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34511962 |
tgcggaaaatagctgtctacatcgatgctatatgacaatactttatgctaattgtgtttgcataataatagcattctgttaaaattccactatgctatga |
34512061 |
T |
|
| Q |
434 |
cgctatagcgtcactatagctgctatttgacaacattgcttcatgtttacgtgttcttgtacgaatgttttat |
506 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34512062 |
tgctatagcgccactatagctgctatttgacaacactgcttcatgtttacgtgttcttgtacgaatgtattat |
34512134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 453
Target Start/End: Original strand, 17933100 - 17933153
Alignment:
| Q |
400 |
aatagcattctgttaaaattccactatgctatgacgctatagcgtcactatagc |
453 |
Q |
| |
|
||||||| |||||| ||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
17933100 |
aatagcaatctgttcaaattcccttatgctataaagctatagcgtcactatagc |
17933153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 9e-29; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 501 - 586
Target Start/End: Original strand, 38095194 - 38095278
Alignment:
| Q |
501 |
ttttatacgaccactatattaatactattactatcataatcatcaaaataacataatatactattgcaataagtgcagtaagaatc |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
38095194 |
ttttatacgaccactatattaatactattactatcgtaatcatcaaaataacataata-actattacaataaatgcagtaagaatc |
38095278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 715 - 786
Target Start/End: Original strand, 38095674 - 38095748
Alignment:
| Q |
715 |
aatcttttggaaaattttatttaaagtgactcaaaca---aaagataaacaaatcccatttgtttgtagcttgag |
786 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095674 |
aatcttttggaaaattttatttaaagtgactcaaacaacaaaagataaacaaatcccatttgtttgtagcttgag |
38095748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 585 - 626
Target Start/End: Original strand, 38095326 - 38095367
Alignment:
| Q |
585 |
tctctaataacagttaaataattgataacctaatagttaaga |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095326 |
tctctaataacagttaaataattgataacctaatagttaaga |
38095367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 675
Target Start/End: Original strand, 38095634 - 38095670
Alignment:
| Q |
639 |
gatagagaagatttgaatactgttattatctattagt |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095634 |
gatagagaagatttgaatactgttattatctattagt |
38095670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 1318618 - 1318652
Alignment:
| Q |
435 |
gctatagcgtcactatagctgctatttgacaacat |
469 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1318618 |
gctatagcgtcactacagctgctatttgacaacat |
1318652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University