View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685-Insertion-3 (Length: 766)

Name: NF4685-Insertion-3
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685-Insertion-3
NF4685-Insertion-3
[»] chr3 (6 HSPs)
chr3 (692-766)||(53699826-53699900)
chr3 (578-686)||(33281712-33281821)
chr3 (574-660)||(39114956-39115041)
chr3 (572-664)||(32708723-32708816)
chr3 (578-669)||(35989100-35989191)
chr3 (578-629)||(49183719-49183770)
[»] chr4 (2 HSPs)
chr4 (572-630)||(48417600-48417658)
chr4 (572-667)||(42777290-42777384)
[»] chr5 (5 HSPs)
chr5 (578-629)||(3676511-3676562)
chr5 (574-626)||(9096346-9096398)
chr5 (578-664)||(19389824-19389910)
chr5 (571-629)||(32125262-32125320)
chr5 (574-630)||(37909024-37909080)
[»] scaffold0036 (1 HSPs)
scaffold0036 (574-678)||(82770-82875)
[»] chr2 (1 HSPs)
chr2 (578-629)||(15803212-15803263)
[»] chr6 (2 HSPs)
chr6 (578-683)||(26713832-26713938)
chr6 (649-689)||(6695269-6695309)
[»] chr7 (4 HSPs)
chr7 (574-683)||(30183817-30183925)
chr7 (605-664)||(23419496-23419556)
chr7 (578-630)||(38137964-38138016)
chr7 (578-628)||(38505340-38505390)
[»] chr8 (5 HSPs)
chr8 (578-629)||(16424171-16424223)
chr8 (578-673)||(31305781-31305876)
chr8 (578-629)||(39778838-39778889)
chr8 (578-629)||(41866123-41866174)
chr8 (572-629)||(6943456-6943513)
[»] scaffold0263 (1 HSPs)
scaffold0263 (578-629)||(12255-12306)
[»] scaffold0002 (1 HSPs)
scaffold0002 (578-629)||(90881-90932)
[»] chr1 (2 HSPs)
chr1 (578-628)||(50587069-50587119)
chr1 (573-630)||(35604257-35604314)


Alignment Details
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 692 - 766
Target Start/End: Complemental strand, 53699900 - 53699826
Alignment:
Q  692 tctcgaagttctctatccttttcttcaaagtcctcccttcaccttccatactcgcaaagaaagcctagagtcata 766  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53699900 tctcgaagttctctattcttttcttcaaagtcctcccttcaccttccatattcgcaaagaaagcctagagtcata 53699826  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 578 - 686
Target Start/End: Original strand, 33281712 - 33281821
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcccaaaattaagg-ggattttatattatgaaaaataataaacc 676  Q
    |||||||||||||||| || |||  ||||||||||| || |||||||||||||  |||| | || | ||| |||||||||||||||||||| |||||| |    
T  33281712 aatttgaagaattcatttaaacccctcaaaatcctcttccaatacaatttttgagttcctataaatgaggaggattttatattatgaaaaaaaataaatc 33281811  T
Q  677 cctcaaaatc 686  Q
    ||||||||||    
T  33281812 cctcaaaatc 33281821  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 660
Target Start/End: Original strand, 39114956 - 39115041
Alignment:
Q  574 attgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcccaaaattaaggggattttatatta 660  Q
    ||||||||||||||||||||||| ||| |  ||| |||||||| ||||||||||  || | |||||||||| | |||||||||||||    
T  39114956 attgaatttgaagaattcatataaaccctctaaagtcctcctccaatacaatttgagt-tccccaaaattaggaggattttatatta 39115041  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 664
Target Start/End: Complemental strand, 32708816 - 32708723
Alignment:
Q  572 aaattgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcc-caaaattaaggggattttatattatgaa 664  Q
    ||||||||||  ||||||||||||| ||||| |||||||||| ||  || ||| ||||| ||||| |||||||| | ||||||| |||||||||    
T  32708816 aaattgaattaaaagaattcatataaaccttccaaaatcctcatctgatccaaattttgaattcctcaaaattatgaggattttgtattatgaa 32708723  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 669
Target Start/End: Complemental strand, 35989191 - 35989100
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcccaaaattaaggggattttatattatgaaaaata 669  Q
    ||||||||||||||||||| | | |||||||  |||||| ||||||||||||   ||||| |||||| | || ||| |||||||||| ||||    
T  35989191 aatttgaagaattcatataaatccttcaaaactctcctctaatacaattttttagttccccaaattaggagggtttaatattatgaagaata 35989100  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 629
Target Start/End: Complemental strand, 49183770 - 49183719
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    ||||||||||||||||||| ||| | ||||| ||||||| ||||||||||||    
T  49183770 aatttgaagaattcatataaaccctccaaaaccctcctctaatacaattttt 49183719  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 630
Target Start/End: Original strand, 48417600 - 48417658
Alignment:
Q  572 aaattgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttg 630  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  48417600 aaattgaatttgaagaattcatatagaccctccaaaatcctcctccaatacaatttttg 48417658  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 667
Target Start/End: Original strand, 42777290 - 42777384
Alignment:
Q  572 aaattgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcccaaaattaaggggattttatattatgaaaaa 667  Q
    ||||| |||||||||||||||| || ||||||||||| | ||||| |||||||||||||  || | ||||| | |  |||||| ||||||||||||    
T  42777290 aaattaaatttgaagaattcatgtaaacctttcaaaa-cttcctccaatacaatttttgagtttctaaaatgatgaagattttgtattatgaaaaa 42777384  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 578 - 629
Target Start/End: Original strand, 3676511 - 3676562
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  3676511 aatttgaagaattcatataaacccttcaaaatcctcctccaatacaattttt 3676562  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 626
Target Start/End: Complemental strand, 9096398 - 9096346
Alignment:
Q  574 attgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatt 626  Q
    ||||||||||||||||||||||| ||| | ||||||||||||| |||||||||    
T  9096398 attgaatttgaagaattcatataaaccctccaaaatcctcctccaatacaatt 9096346  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 664
Target Start/End: Original strand, 19389824 - 19389910
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcccaaaattaaggggattttatattatgaa 664  Q
    |||||||||||||||| || ||| | ||||||||||||| ||||||||||||   ||||| |||| | | ||||||| |||||||||    
T  19389824 aatttgaagaattcatgtaaaccctccaaaatcctcctccaatacaattttttagttccccaaatgaggaggattttgtattatgaa 19389910  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 32125262 - 32125320
Alignment:
Q  571 caaattgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    |||||||||||||||||||||||| | ||| |  |||||||||||| ||||||||||||    
T  32125262 caaattgaatttgaagaattcatacaaaccctctaaaatcctcctccaatacaattttt 32125320  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 630
Target Start/End: Complemental strand, 37909080 - 37909024
Alignment:
Q  574 attgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttg 630  Q
    ||||||||||||||||||||||| ||| | ||||| ||||||| ||||||| |||||    
T  37909080 attgaatttgaagaattcatataaaccctccaaaaccctcctccaatacaacttttg 37909024  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 574 - 678
Target Start/End: Complemental strand, 82875 - 82770
Alignment:
Q  574 attgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattccc-aaaattaaggggattttatattatgaaaaataata 672  Q
    |||||||||||||| |||||||| ||| | ||||||| ||||| ||||||||||| |  |||||  |||||| | ||||||| ||||||||| || ||||    
T  82875 attgaatttgaagagttcatataaaccctccaaaatcatcctccaatacaattttggagttccctcaaattaggaggattttgtattatgaagaaaaata 82776  T
Q  673 aacccc 678  Q
    ||||||    
T  82775 aacccc 82770  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 578 - 629
Target Start/End: Complemental strand, 15803263 - 15803212
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    ||||||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  15803263 aatttgaagaattcatataaaccctccaaaatcctcctccaatacaattttt 15803212  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 683
Target Start/End: Complemental strand, 26713938 - 26713832
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcccaaaattaaggggatttt-atattatgaaaaataataaacc 676  Q
    ||||||||||||||||||| ||| | ||||| ||||||| |||||||||||||  ||||| |||| | | |||||||  ||| ||||| || ||| ||||    
T  26713938 aatttgaagaattcatataaaccctccaaaaccctcctccaatacaatttttgagttccccaaatgaggaggattttcttatcatgaagaaaaattaacc 26713839  T
Q  677 cctcaaa 683  Q
    |||||||    
T  26713838 cctcaaa 26713832  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 689
Target Start/End: Complemental strand, 6695309 - 6695269
Alignment:
Q  649 gattttatattatgaaaaataataaacccctcaaaatcctc 689  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  6695309 gattttgtattatgaaaaataataaaccccccaaaatcctc 6695269  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 683
Target Start/End: Complemental strand, 30183925 - 30183817
Alignment:
Q  574 attgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcccaaaattaaggggattttatattatgaaaaataataa 673  Q
    ||||||||||||||||||||| | | | | ||||||||||||| || |||||||| || | ||||||| || | ||||||| |||| |||| || ||| |    
T  30183925 attgaatttgaagaattcatacaaagcctccaaaatcctcctccaaaacaattttagt-tccccaaaactaggaggattttgtattttgaagaaaaatga 30183827  T
Q  674 acccctcaaa 683  Q
    ||||||||||    
T  30183826 acccctcaaa 30183817  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 664
Target Start/End: Original strand, 23419496 - 23419556
Alignment:
Q  605 aaaatcctcctcaaatacaatttttgta-ttcccaaaattaaggggattttatattatgaa 664  Q
    ||||||||||||||||||||||||| || ||||| |||||| ||||||| | |||||||||    
T  23419496 aaaatcctcctcaaatacaatttttttagttccccaaattagggggattgtgtattatgaa 23419556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 630
Target Start/End: Complemental strand, 38138016 - 38137964
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttg 630  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||| |||||    
T  38138016 aatttgaagaattcatatagaccttccaataccctcctccaatacaaattttg 38137964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 628
Target Start/End: Original strand, 38505340 - 38505390
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttt 628  Q
    ||||||||||||||||||| ||| | ||||| ||||||| |||||||||||    
T  38505340 aatttgaagaattcatataaaccctccaaaaccctcctccaatacaatttt 38505390  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 629
Target Start/End: Complemental strand, 16424223 - 16424171
Alignment:
Q  578 aatttgaagaattcatatagacctt-tcaaaatcctcctcaaatacaattttt 629  Q
    ||||||||||||||||||| ||| | |||||||||||||| ||||||||||||    
T  16424223 aatttgaagaattcatataaaccctctcaaaatcctcctctaatacaattttt 16424171  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 673
Target Start/End: Original strand, 31305781 - 31305876
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttgtattcccaaaattaaggggattttatattatgaaaaataataa 673  Q
    ||||||||||||||||||| ||| | ||||||||| ||| ||||||||| ||   ||||| |||||||| || ||||| ||| |||| || |||||    
T  31305781 aatttgaagaattcatataaaccctccaaaatccttctccaatacaattgtttcgttccccaaattaagagggttttacattttgaagaaaaataa 31305876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 629
Target Start/End: Complemental strand, 39778889 - 39778838
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    ||||||||||||||||||| ||| | |||||| |||||| ||||||||||||    
T  39778889 aatttgaagaattcatataaaccatccaaaattctcctccaatacaattttt 39778838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 629
Target Start/End: Original strand, 41866123 - 41866174
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    ||||||||||||| ||||| ||| ||||||| ||||||| ||||||||||||    
T  41866123 aatttgaagaatttatataaacccttcaaaaccctcctccaatacaattttt 41866174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 629
Target Start/End: Original strand, 6943456 - 6943513
Alignment:
Q  572 aaattgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    ||||| ||||||||||||||||||  ||| | ||||| ||||||| ||||||||||||    
T  6943456 aaattaaatttgaagaattcatattaaccctccaaaaccctcctccaatacaattttt 6943513  T

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Target: scaffold0263 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 629
Target Start/End: Original strand, 12255 - 12306
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    ||||||||||||||||||| ||| | ||||| ||||||| ||||||||||||    
T  12255 aatttgaagaattcatataaaccatccaaaaacctcctccaatacaattttt 12306  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 629
Target Start/End: Original strand, 90881 - 90932
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaattttt 629  Q
    ||||||||||||||||||| ||| | ||||| ||||||| ||||||||||||    
T  90881 aatttgaagaattcatataaaccatccaaaaccctcctccaatacaattttt 90932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 628
Target Start/End: Complemental strand, 50587119 - 50587069
Alignment:
Q  578 aatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttt 628  Q
    ||||||||||||||||||| ||| ||||||| ||||||| ||| |||||||    
T  50587119 aatttgaagaattcatataaacccttcaaaaccctcctccaatgcaatttt 50587069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 630
Target Start/End: Original strand, 35604257 - 35604314
Alignment:
Q  573 aattgaatttgaagaattcatatagacctttcaaaatcctcctcaaatacaatttttg 630  Q
    |||| |||||||| |||||||||| ||| ||||||||| ||||  |||||||||||||    
T  35604257 aatttaatttgaaaaattcatataaacccttcaaaatcgtcctttaatacaatttttg 35604314  T

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