View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685-Insertion-6 (Length: 495)

Name: NF4685-Insertion-6
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685-Insertion-6
NF4685-Insertion-6
[»] chr3 (1 HSPs)
chr3 (7-495)||(32179182-32179684)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 495
Target Start/End: Complemental strand, 32179684 - 32179182
Alignment:
Q  7 atttataacaaactattgatgttttttcattattataaatgcataatagaaaataatgacattagagagatgcaaatgacattaggtagagtttaaagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  32179684 atttataacaaactattgatgttttttcattattataaatgcataatagaaaataataacattagagaggtgcaaatgacattaggtagagtttaaagta 32179585  T
Q  107 attgaaattaccttgaaaatttaaagtaataatannnnnnnnnnnnnnnnnnnnnnnnnacaaatataacgattattatggaactctttaaaaaacgaac 206  Q
    |||| ||||||||||||| |||||||||||||||                         |||||||||||||| |||||||||||||||||||||||| |    
T  32179584 attg-aattaccttgaaagtttaaagtaataatattttttagataattttttatcttttacaaatataacgataattatggaactctttaaaaaacgatc 32179486  T
Q  207 attatgaaacaaattga---taaataattaaccgatacgtaannnnnnnngtgctaacactctaattcattgaggagatagttctagtaatccggaactc 303  Q
    |||||||||||||| ||   ||||||||||||||||| ||||        |||||||||||||||||||||||| |||||||||||||||||||||  ||    
T  32179485 attatgaaacaaatagatactaaataattaaccgatatgtaattttttttgtgctaacactctaattcattgagaagatagttctagtaatccggaggtc 32179386  T
Q  304 agatgtaagtaaatctgatcaagaattctttcatacataatcgaatttaaattccctcagacaattcannnnnnnatgaagctcgtta----------tg 393  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |       |||||||||||||          ||    
T  32179385 agaggtaagtaaatctgatcaagaattctttcacacataatcgaa-ttaaattccctcagacaatttatttttttatgaagctcgttaatcacttaactg 32179287  T
Q  394 taatcaagttgaaaatatttaatgtacc---cttacatcaagaatccaatatcttgctacaacnnnnnnnngggtggagataactatactattttacgcc 490  Q
    |||||| ||| || |||||||||| |||   |||||||||||||||||||| |||||||||||        ||| |||||||||||||||||||||| ||    
T  32179286 taatcatgttaaagatatttaatggacccttcttacatcaagaatccaataccttgctacaacttttttttgggcggagataactatactattttacacc 32179187  T
Q  491 gacaa 495  Q
    |||||    
T  32179186 gacaa 32179182  T

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