View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685-Insertion-7 (Length: 479)
Name: NF4685-Insertion-7
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685-Insertion-7 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 479
Target Start/End: Original strand, 33005830 - 33006303
Alignment:
| Q |
7 |
actctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtggttgaaattgaacaaagcaaactcaacgattcgcg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33005830 |
actctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtggttgaagttgaacaaagcaaactcaacgattcgcg |
33005929 |
T |
|
| Q |
107 |
aaaagatggcatggatttagtaacaccaagttcaagttgcatggtaacttcttgtggtaggtcttgnnnnnnnattggagggaggaaagtgcagtgtatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33005930 |
aaaagatggcatggatttagtaacaccaagttcaagttgcatggtaacttcttgtggtaggtcttgtttttttattggagggaggaaagtgcagtgtatg |
33006029 |
T |
|
| Q |
207 |
gttgaaggaagagattcaagtaatttgagggtggctgggataggcgcatcaatggtggggaagatgcaagtgatttggaagtggttatggacttgaatga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33006030 |
gttgaaggaagagattcaagtaatttgagggtggctgggataggtgcatcaatggtggggaagatgcaagtgatttggaagtggttatggacttgaatga |
33006129 |
T |
|
| Q |
307 |
gtctcttgcagaactcaattacagaagattcatggctaaacagagggattgatgttactactatatgactagttggttttgtttcggccat-gaatggaa |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33006130 |
gtctcttgcagaactcaattacagaagattcatggctaaacagagggattgatgttactactatatgactagttggttttgtttcggccatggaatggaa |
33006229 |
T |
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| Q |
406 |
ttggagagagaattgctaactatagatcagtgatttggtttatggtttatgaagttgctcatttaaattatata |
479 |
Q |
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| T |
33006230 |
ttggagagagagttgctaactatagatcagtgatttggtttatggtttatgaagttgctcatttaaattatata |
33006303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 180 - 374
Target Start/End: Original strand, 3778776 - 3778970
Alignment:
| Q |
180 |
attggagggaggaaagtgcagtgtatggttgaaggaagagattcaagtaatttgagggtggctgggataggcgcatcaatggtggggaagatgcaagtga |
279 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
3778776 |
attggagggaggaaagtgcagtttatggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtggggaagatgcaagtga |
3778875 |
T |
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| Q |
280 |
tttggaagtggttatggacttgaatgagtctcttgcagaactcaattacagaagattcatggctaaacagagggattgatgttactactatatga |
374 |
Q |
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|| | ||||| ||||| ||||| ||||||||||| |||||||| | |||| || |||||||||| ||| ||||| ||||||||||||||| |
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| T |
3778876 |
catgaatgtggtgatggagatgaattagtctcttgcaaaactcaataatagaactttggtggctaaacacaggaattgaagttactactatatga |
3778970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 3707254 - 3706902
Alignment:
| Q |
9 |
tctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtg---gttgaaattgaacaaagcaaactcaacgattcgc |
105 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||| | |||| || |||||| |||||| ||||||| || || |||||||| | || |
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| T |
3707254 |
tctttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggtgtgcatgttgaagttgaacacagtaacctcaacgagttgc |
3707155 |
T |
|
| Q |
106 |
gaaaagatggcatggatttagtaacaccaagttcaagttgcatggtaacttcttgtggtaggtcttgnnnnnnnattggagggaggaaagtgcagtgtat |
205 |
Q |
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||| |||||||||||||| | || | ||||||| || |||| ||| || ||||| | |||| | ||||||||||||||| ||||| ||| |
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| T |
3707154 |
gaagagatggcatggattgaaccaccgcgagttcaatttccatgccaacatcgtgtgggaagtctagtttgtttattggagggaggaaactgcagcttat |
3707055 |
T |
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| Q |
206 |
ggttgaaggaagagattcaagtaatttgagggtggctgggataggcgcatcaatggtggggaagatgcaagtgatttggaagtggttatggacttgaatg |
305 |
Q |
| |
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|| |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || | ||||| ||||| ||||| |
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| T |
3707054 |
ggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtggggaagatgcaagtgacatgaatgtggtgatggagatgaatt |
3706955 |
T |
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| Q |
306 |
agtctcttgcagaactcaattacagaagattcatggctaaacagagggattga |
358 |
Q |
| |
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||||||||||| |||||||| | |||| || ||||||||| ||||||||||| |
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| T |
3706954 |
agtctcttgcaaaactcaataatagaactttgatggctaaatagagggattga |
3706902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 182 - 374
Target Start/End: Complemental strand, 3700397 - 3700205
Alignment:
| Q |
182 |
tggagggaggaaagtgcagtgtatggttgaaggaagagattcaagtaatttgagggtggctgggataggcgcatcaatggtggggaagatgcaagtgatt |
281 |
Q |
| |
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|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |
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| T |
3700397 |
tggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggcagggataggtgcatcaatagtggggaagatgcaagtgata |
3700298 |
T |
|
| Q |
282 |
tggaagtggttatggacttgaatgagtctcttgcagaactcaattacagaagattcatggctaaacagagggattgatgttactactatatga |
374 |
Q |
| |
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|| | || ||||||| ||||||||||||||||| |||||||||| || |||| ||||| || ||||||| ||| ||||| |||||||| |
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| T |
3700297 |
tgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactgctatatga |
3700205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 180 - 358
Target Start/End: Original strand, 3771115 - 3771293
Alignment:
| Q |
180 |
attggagggaggaaagtgcagtgtatggttgaaggaagagattcaagtaatttgagggtggctgggataggcgcatcaatggtggggaagatgcaagtga |
279 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||||||| |
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| T |
3771115 |
attggagggaggaaagtgcagtttatggatgaaggaagagattcaagtaatttgagggtggcagggattggtgcatcaatagtggagaagatgcaagtga |
3771214 |
T |
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| Q |
280 |
tttggaagtggttatggacttgaatgagtctcttgcagaactcaattacagaagattcatggctaaacagagggattga |
358 |
Q |
| |
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| || | ||||| ||||| ||||| |||||||||||||||||||| | |||| || |||||||| ||||| ||||| |
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| T |
3771215 |
tatgaatgtggtgatggagatgaattagtctcttgcagaactcaataatagaactttggtggctaaatagaggaattga |
3771293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 358
Target Start/End: Complemental strand, 3718589 - 3718411
Alignment:
| Q |
180 |
attggagggaggaaagtgcagtgtatggttgaaggaagagattcaagtaatttgagggtggctgggataggcgcatcaatggtggggaagatgcaagtga |
279 |
Q |
| |
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|||||||||||||||||||| | ||||| ||| |||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
3718589 |
attggagggaggaaagtgcattttatggatgacggaagagactcaagtaatttgagggtggcagggattggtgcatcaatggtggggaagatgcaagtga |
3718490 |
T |
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| Q |
280 |
tttggaagtggttatggacttgaatgagtctcttgcagaactcaattacagaagattcatggctaaacagagggattga |
358 |
Q |
| |
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|| | ||||| ||||| ||||| | ||||||||| |||||||| | |||| || |||||||| ||||| ||||| |
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| T |
3718489 |
catgaatgtggtgatggagatgaattaatctcttgcaaaactcaataatagaactttggtggctaaatagaggaattga |
3718411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 3718763 - 3718646
Alignment:
| Q |
9 |
tctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtg---gttgaaattgaacaaagcaaactcaacgattcgc |
105 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||| | |||| || |||||| ||||||||||||||||| || |||||| | | | |
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| T |
3718763 |
tctttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggtgtgcatgttgaaattgaacaaagtaacctcaacaagttcc |
3718664 |
T |
|
| Q |
106 |
gaaaagatggcatggatt |
123 |
Q |
| |
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||| | |||||||||||| |
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| T |
3718663 |
gaagacatggcatggatt |
3718646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 3770941 - 3770993
Alignment:
| Q |
9 |
tctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctac |
61 |
Q |
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||||| ||||||||||||||||| ||||| ||||||||||||| | |||||| |
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| T |
3770941 |
tcttttgctatttctaatgcttgacttgcataaggatcaacaaccaatgctac |
3770993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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