View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_high_1 (Length: 523)
Name: NF4685_high_1
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 13472459 - 13471968
Alignment:
| Q |
16 |
aatcaaacaaaatcgatagtctttaaataatattttttggactaaatgtagaagcatatactatgttgcgaatatattattatatataaacctcaaatag |
115 |
Q |
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| T |
13472459 |
aatcaaacaaaatcgatagtctttaaataatattttttggactaaatgtagaagcatata---tgttgcgaatatattattatatataaacctcaaatag |
13472363 |
T |
|
| Q |
116 |
gtcgatgaagctttaaacagtcctatatgtagaagcaaggttcctttgacacggaagacaacgaggtattcttctttctctggagatcaatgcgccaaaa |
215 |
Q |
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| T |
13472362 |
gtcgatgaagctttaaacagtcctatatgtagaagcaaggttcctttgacacaaaagacaacgaggcattcttctttctctggagatcaatgcgccaaaa |
13472263 |
T |
|
| Q |
216 |
caaactatgctccacatttaggagacgccatattagttataggtcatattccaatcgccagcatgtttcaaggaaaaaatgtttgaaaatggaatagacg |
315 |
Q |
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| T |
13472262 |
caaactatgctccacatttagaagacgccaaattagttataggtcctattccaatcaccagcatgtttcaaggaaaaaatgtttgaaaatggaatagacg |
13472163 |
T |
|
| Q |
316 |
ctgcagtgaaggccaacaatgagaataggacctataactactatcgcgtctactacttaatgtggagagtagtctgttttggcacattgatctccacaaa |
415 |
Q |
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| T |
13472162 |
ctgcagtgaaggccaacaatgagaataagacctataactattgtcgcatctactacttaatgtggagagtagtctgttttggcacattgatctccacaaa |
13472063 |
T |
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| Q |
416 |
aatttgaactgactgatagggtttgaaaatagcaattgtcaatggtttctgggcgaactcgttagaagcgcttgaagtatatttgctcacaggtt |
510 |
Q |
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| T |
13472062 |
aatttgaactgactgataggatttgaaaatagcaattgtcaatggtatctgggcgaactccttagaagcgcttgaagtatatctgctcacaggtt |
13471968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 152 - 457
Target Start/End: Complemental strand, 13468227 - 13467924
Alignment:
| Q |
152 |
aaggttcctttgacacggaagacaacgaggtattcttctttctctggagatcaatgcgccaaaacaaactatgctccacatttaggagacgccatattag |
251 |
Q |
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|||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||| || ||||| |
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| T |
13468227 |
aaggttgctttgacaccaaagtcaacgagacattcttctttctctggagatcaatgtgccaaaacagactatgctccacattcagaagacgtca-attag |
13468129 |
T |
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| Q |
252 |
ttataggtcatattccaatcgccagcatgtttcaaggaaaaaatgtttgaaaatggaatagacgctgcagtgaaggccaacaatgagaataggacctata |
351 |
Q |
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| T |
13468128 |
ttatatgtcctattctgatcattgccatgtttcaaggaaacaatgtttgaaaatggaatagacgtggcaatgaaggcccgctatgagaataggacctata |
13468029 |
T |
|
| Q |
352 |
actactatcgcgtctactacttaatgtggagagtagtctgttttggcacattgatctccacaaaaatttgaactgactgatagggtttgaaaatagcaat |
451 |
Q |
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| T |
13468028 |
acta-tgtggcatctactaccgaatatgaagcttagtctgttttggcacattgatctccacataaatatgaactgactgatatggtttgaaaatagcaat |
13467930 |
T |
|
| Q |
452 |
tgtcaa |
457 |
Q |
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|||||| |
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| T |
13467929 |
tgtcaa |
13467924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Original strand, 13468146 - 13468183
Alignment:
| Q |
374 |
aatgtggagagtagtctgttttggcacattgatctcca |
411 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
13468146 |
aatgtggagcatagtctgttttggcacattgatctcca |
13468183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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