View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685_high_10 (Length: 280)

Name: NF4685_high_10
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685_high_10
NF4685_high_10
[»] chr6 (10 HSPs)
chr6 (24-270)||(28017821-28018060)
chr6 (24-267)||(27917176-27917412)
chr6 (24-207)||(28047460-28047640)
chr6 (58-213)||(28074634-28074786)
chr6 (34-218)||(28035576-28035757)
chr6 (42-201)||(28091631-28091784)
chr6 (34-108)||(27922091-27922165)
chr6 (201-267)||(28001682-28001748)
chr6 (34-201)||(28018603-28018767)
chr6 (78-142)||(28534354-28534418)
[»] chr5 (1 HSPs)
chr5 (35-207)||(1440036-1440205)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 28017821 - 28018060
Alignment:
Q  24 aatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataa 123  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |||    
T  28017821 aatatctattatcaaaaccatgtctctgacatcatgatttg-ttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaaggtaa 28017919  T
Q  124 ttcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattccttcca 223  Q
    ||||||||||||||||| |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||    |||||||||||| |||    
T  28017920 ttcaggatgcatggagaaacatgaagaagtgtctaattcaagc---taatgccacacaaaatgattatcaaacattgagg----tcattcattcctccca 28018012  T
Q  224 tttctttgttgtca-ttctgttcatattcagcatgtcttcaccctatg 270  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  28018013 tttctttgttgtcatttctgttgatattcagcatgtcttcaccctatg 28018060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 27917176 - 27917412
Alignment:
Q  24 aatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataa 123  Q
    ||||||| | |||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || ||    
T  27917176 aatatctcttatcataactatgtctctgacatcatgatatggttgttgtgttatgttaggtatgaatcaccttattggagatcccttgcagcaacgagaa 27917275  T
Q  124 ttcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattccttcca 223  Q
    |||||| |||||||||||||| ||||||| ||||||  | |||    |||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  27917276 ttcaggttgcatggagatacaggaagaagcgtctaaggccagc---aaataccacacaaaatgattatcaaacattgagg----tcattcattccttcca 27917368  T
Q  224 tttctttgttgtcattctgttcatattcagcatgtcttcaccct 267  Q
    |||| |||||||| ||||||  ||||||||||||||||||||||    
T  27917369 tttccttgttgtctttctgtcgatattcagcatgtcttcaccct 27917412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 28047460 - 28047640
Alignment:
Q  24 aatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataa 123  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| | ||    
T  28047460 aatatctattatcaaaaccatgtctctgacatcatgatttggttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaacagaa 28047559  T
Q  124 ttcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcat 207  Q
    |||||| ||||||||||  || ||||||| ||||||  | |||   |||||||||||||||| |||||||||||||||||||||    
T  28047560 ttcaggttgcatggagaagcaggaagaagcgtctaagacgagc---taataccacacaaaattattatcaaacattgaggtcat 28047640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 213
Target Start/End: Original strand, 28074634 - 28074786
Alignment:
Q  58 tgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtct 157  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  28074634 tgatttggttgttgtgttatgttaggtatgaatcaccttattggagattccttgcagcaaaaagaattcaggatgcatggagaaacatgaagaagtgtct 28074733  T
Q  158 aattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattc 213  Q
    || ||||||   |||||||||||||||||||||||||||||| |||||||||||||    
T  28074734 aagtcaagc---taataccacacaaaatgattatcaaacattaaggtcattcattc 28074786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 28035576 - 28035757
Alignment:
Q  34 atcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgc 133  Q
    |||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||| | |||||||| |||    
T  28035576 atcaaaaccatggctctgacatcatgatttggttgttgtgtcatgttaggtatcaatcaccttattggagatcacttgcagcaaacagaattcaggttgc 28035675  T
Q  134 atggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattcc 218  Q
    ||||||  | | ||||||| |||||| ||||||   |||||||||||||||| |||||||||||| | |||||||||||| ||||    
T  28035676 atggagcaataggaagaagcgtctaagtcaagc---taataccacacaaaataattatcaaacatcgtggtcattcattccttcc 28035757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 28091631 - 28091784
Alignment:
Q  42 catgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagat 141  Q
    |||| ||||||||| ||||||||||| |   |||| ||||||||||||||| |||| |||||||||| ||||||||| | ||||| || |||||||||||    
T  28091631 catgactctgacatgatgatttggttat---gttatgttaggtatgaatcaacttactggagatcacttgcagcaaatagaattcgggttgcatggagat 28091727  T
Q  142 acatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattga 201  Q
    ||| ||||||  |||||| | ||||   ||||||||||||||||||||||||||||||||    
T  28091728 acaggaagaaacgtctaagtaaagc---taataccacacaaaatgattatcaaacattga 28091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 27922091 - 27922165
Alignment:
Q  34 atcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcac 108  Q
    |||||||||||| ||||||||| |||||||| |  |||||||| |||||||||||||| |||||| ||| |||||    
T  27922091 atcaaaaccatggctctgacataatgatttgatgattgtgttatgttaggtatgaatcgccttatgggaaatcac 27922165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 28001682 - 28001748
Alignment:
Q  201 aggtcattcattcattccttccatttctttgttgtcattctgttcatattcagcatgtcttcaccct 267  Q
    |||||||| ||| |||||||||||||| ||||| || ||||| | ||||||||||||||||||||||    
T  28001682 aggtcattaatttattccttccatttcattgttctctttctggtgatattcagcatgtcttcaccct 28001748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 28018603 - 28018767
Alignment:
Q  34 atcaaaaccatgtctctgacatcatgatttg--gttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggat 131  Q
    |||||||||||| |||||||||  |||||||  | | |||||||| |||||||||||||| |||||| ||| ||||| |  | |||| | |||||||| |    
T  28018603 atcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaaatcacatagaccaaacagaattcaggtt 28018702  T
Q  132 gcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattga 201  Q
    |||||||||   | ||||||| ||||||  | ||||||||      ||||||||||| ||||||||||||    
T  28018703 gcatggagaagtaggaagaagcgtctaagacgagctaata-----ccacaaaatgatcatcaaacattga 28018767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 28534354 - 28534418
Alignment:
Q  78 gttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagata 142  Q
    ||||||||||||||||||||||||||||| |  |||||||    |||||||| ||||||||||||    
T  28534354 gttaggtatgaatcaccttattggagatccctagcagcaacccgaattcaggttgcatggagata 28534418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 1440036 - 1440205
Alignment:
Q  35 tcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgca 134  Q
    ||||||| ||| ||||| | | |||||||||||||| || || ||||||||||||||  | ||||||||||||| ||||||||| | ||||| || ||||    
T  1440036 tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca 1440135  T
Q  135 tggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcat 207  Q
    |||||||||| ||||||| |||||| || |||   |||||||| ||||||||||||||||||||||| |||||    
T  1440136 tggagatacaggaagaagcgtctaagtcgagc---taataccagacaaaatgattatcaaacattgatgtcat 1440205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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