View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_high_12 (Length: 252)
Name: NF4685_high_12
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 45374128 - 45373888
Alignment:
| Q |
1 |
tgcactgcatctttgacatctaatgcagctcacatagttttcaaactttatgaaaatatgttgccaaatcttgtgtcaaaaatcattgagtttaagttaa |
100 |
Q |
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| T |
45374128 |
tgcactgcatctttgacatctaatgcaactcacatagttttcaaactttatgaaaatatgttgccaaatcttgtgtcaaaaatcattaagtttaagttaa |
45374029 |
T |
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| Q |
101 |
cttatcgagaatgcaacttgcaagttgcaactggtaaattttatcctcagaatagtttgcaaactttgcataatgcttactatactttcaataattgtta |
200 |
Q |
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| T |
45374028 |
cttatcgagaatgcaacttgcaagttgcaactggtaaattttatcctcataatagtttgcaaactttgcataatgcttactatactttcaataattgtta |
45373929 |
T |
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| Q |
201 |
attagtacatgctatgtacttcgtctactaatcgctttcat |
241 |
Q |
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| T |
45373928 |
attagtacatgctatgtacttcgtctactaatcgctttcat |
45373888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 45389298 - 45389068
Alignment:
| Q |
1 |
tgcactgcatctttgacatctaatgcagctcacatagttttcaaactttatgaaaatatgttgccaaatcttgtgtcaaaaatcattgagtttaagttaa |
100 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| | |
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| T |
45389298 |
tgcactgcatctttgacatcaaatgcagccaacatagttttcaaactttatgaaaatatgttgccaaatcttgtgtc---aattattgagcttaagttga |
45389202 |
T |
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| Q |
101 |
cttatcgagaatgcaacttgcaagttgcaactggtaaattttatcctcagaatagtttgcaaactttgcataatgcttactatactttcaataattgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
45389201 |
cttatcgagaatgcaacttgcaagttgcaactagtaaattttagcctcacaatag---------tttgctcaatgcttactatactttcaataattgtta |
45389111 |
T |
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| Q |
201 |
attagtacatgctatgtacttcgtctactaatcgctttcatct |
243 |
Q |
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| T |
45389110 |
attagtacacgctatgtactccgtctattaatcgctttcatct |
45389068 |
T |
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