View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_high_13 (Length: 252)
Name: NF4685_high_13
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_high_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 5511314 - 5511078
Alignment:
| Q |
16 |
aaacaggataatgcatgaaacaataaagcacttgtttcttgtcaaaatacactagtagtttaatatccacaaaacacttacggcattttaaagcaacgaa |
115 |
Q |
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| T |
5511314 |
aaacaggataatgcatgaaacaataaagcacttgtttcttgtcaaaatacactagtagtttaatatccacaaaacacttacggcattttaaagcaacgaa |
5511215 |
T |
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| Q |
116 |
ttgaagtcattagaagcactgaagcacaaatatcattcccaagtatcttgttaataaaggttacagaataaaccccttaaattaattgcataccaagtaa |
215 |
Q |
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| T |
5511214 |
ttgaagtcattagaagcactgaagcacaaatattattcccaagtatcttgttaataaaggttacagaatcaaccccttaaattaattgcttaccaagtaa |
5511115 |
T |
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| Q |
216 |
tgttattctatatgaaaaacacaatatggtcaaaata |
252 |
Q |
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| T |
5511114 |
tgttattctatatgaaaaacacaatatggtcaaaata |
5511078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 5510915 - 5510846
Alignment:
| Q |
181 |
gaataaaccccttaaattaattgcataccaag-taatgttattctatatgaaaaacacaatatggtcaaaa |
250 |
Q |
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| T |
5510915 |
gaataaaccccttaaatta-ttgcatgacaagctaatgttattctaaatgaaaaacataatatggtaaaaa |
5510846 |
T |
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