View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685_high_14 (Length: 251)

Name: NF4685_high_14
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685_high_14
NF4685_high_14
[»] chr3 (26 HSPs)
chr3 (1-205)||(24496617-24496821)
chr3 (112-234)||(25464423-25464546)
chr3 (134-240)||(18166520-18166626)
chr3 (112-219)||(19377004-19377112)
chr3 (134-240)||(19394513-19394619)
chr3 (122-240)||(17726054-17726173)
chr3 (122-240)||(19027283-19027402)
chr3 (134-240)||(18117320-18117426)
chr3 (111-240)||(19382257-19382387)
chr3 (122-239)||(19456661-19456779)
chr3 (122-226)||(18872395-18872500)
chr3 (134-240)||(18148182-18148288)
chr3 (134-232)||(19352764-19352862)
chr3 (134-240)||(19426054-19426160)
chr3 (134-240)||(19438310-19438416)
chr3 (71-218)||(16678593-16678750)
chr3 (134-240)||(19335376-19335482)
chr3 (48-218)||(19465738-19465918)
chr3 (22-199)||(24493190-24493375)
chr3 (112-218)||(17951209-17951316)
chr3 (122-232)||(18109802-18109913)
chr3 (122-240)||(19355079-19355198)
chr3 (134-240)||(17943318-17943424)
chr3 (134-232)||(18017394-18017492)
chr3 (134-240)||(19401090-19401196)
chr3 (134-240)||(19462544-19462650)
[»] chr4 (2 HSPs)
chr4 (73-238)||(2709032-2709207)
chr4 (37-240)||(15536897-15537110)
[»] chr8 (1 HSPs)
chr8 (45-240)||(8460930-8461135)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24496617 - 24496821
Alignment:
Q  1 ttcagaagcaggaactcactttctgtttggaactacccttaaccagcaggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacataga 100  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24496617 ttcagaagcaggaactcactttctctttggaactaaccttaaccagcaggagctcaattttagtgaaaattatttaaatttaccatcaaagttacataga 24496716  T
Q  101 gcttgtcatcgataaactgatagtatgtatgccccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  24496717 gcttgtcatcgataaactgatagtatgtatgccccatttcctaatacgaaacaaaggaccacagatcaaccagaaacctattccaaatccaactcccatg 24496816  T
Q  201 cctag 205  Q
    |||||    
T  24496817 cctag 24496821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 25464546 - 25464423
Alignment:
Q  112 ataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtaca 210  Q
    |||||| || |||||| ||||| |||||||||||||  |||||||| | ||||||||  ||||||||||||| ||||||||||||||| |||||| ||||    
T  25464546 ataaaccgaaagtatgcatgcctccatttcctaataaaaaacaaagaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagataca 25464447  T
Q  211 atgattctcatatagagtcatcgt 234  Q
    ||||||||  ||||||||||||||    
T  25464446 atgattcttttatagagtcatcgt 25464423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 18166626 - 18166520
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| |||||| ||||||||| | ||||||||  ||||||||||| | ||||||||||||||||||||||||||||  |||||| ||||||||||||     
T  18166626 ccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgcctaggtacaaccattctcttatagagtcatca 18166527  T
Q  234 tcttcat 240  Q
    |||||||    
T  18166526 tcttcat 18166520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 19377112 - 19377004
Alignment:
Q  112 ataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtaca 210  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||||||| | | ||||||  ||||||||||| | |||||||||||||||||||||| ||||    
T  19377112 ataaactgaaagtatgcatgcctccatttcctaataagaaacaaagaaccgcaaatcccccagaaacctactgcaaatccaactcccatgcctagataca 19377013  T
Q  211 atgattctc 219  Q
    |||||||||    
T  19377012 atgattctc 19377004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19394619 - 19394513
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    ||||||||||||| ||||||||| | ||||||||  ||||||||||| | |||||||||||||||| ||||| ||||||||||||  ||||||||| ||     
T  19394619 ccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttca 19394520  T
Q  234 tcttcat 240  Q
    |||||||    
T  19394519 tcttcat 19394513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 17726054 - 17726173
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| |||||| |||||| ||||||||| | ||||||||  ||||||||||| | |||||||||||||||| ||||| ||||||||||||      
T  17726054 agtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttt 17726153  T
Q  221 tatagagtcatcgtcttcat 240  Q
     ||||||||||| |||||||    
T  17726154 gatagagtcatcatcttcat 17726173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 19027283 - 19027402
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| |||||| |||||| ||||||||| | ||||||||  ||||||||||| | |||||||||||||||| ||||| ||||||||||||      
T  19027283 agtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttt 19027382  T
Q  221 tatagagtcatcgtcttcat 240  Q
     ||||||||||| |||||||    
T  19027383 gatagagtcatcatcttcat 19027402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 18117426 - 18117320
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    ||||||||||||| |||||| || | ||||||||  ||||||||||| | ||||||| |||||||||||||| |||||||| |||| |||||| |||||     
T  18117426 ccatttcctaataagaaacatagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctagatacaatgactctcttatagattcatca 18117327  T
Q  234 tcttcat 240  Q
    |||||||    
T  18117326 tcttcat 18117320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 19382387 - 19382257
Alignment:
Q  111 gataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtac 209  Q
    ||||||| || |||||| ||||| ||||||||||||| |||| |||| | ||||||||  ||| ||||||| |||||||||||||||||||||||| |||    
T  19382387 gataaaccgaaagtatgcatgcctccatttcctaataagaaataaagaaccacaaatcccccaaaaacctactccaaatccaactcccatgcctagatac 19382288  T
Q  210 aatgattctcatatagagtcatcgtcttcat 240  Q
    || || |||  |||||| ||||| |||||||    
T  19382287 aacgactctattatagattcatcatcttcat 19382257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 19456779 - 19456661
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| ||||||||||||| ||||||||| | ||||||||  ||||||||||| | ||||||||||||||| ||| ||  ||| ||||||||     
T  19456779 agtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccaagccgagaaacattgattctct 19456680  T
Q  221 tatagagtcatcgtcttca 239  Q
    |||||||||||| ||||||    
T  19456679 tatagagtcatcatcttca 19456661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 18872395 - 18872500
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| ||||||||||||| ||||||||| | ||||||||  ||||||||||| | ||||||||||||||||||| || |||| ||||||||     
T  18872395 agtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgccaagatacattgattctct 18872494  T
Q  221 tataga 226  Q
    ||||||    
T  18872495 tataga 18872500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 18148288 - 18148182
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    ||||||||||||| ||||||||| | ||||||||  ||||||||||| | ||||||| |||||||||||||  ||||| || |||| |||||| |||||     
T  18148288 ccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatca 18148189  T
Q  234 tcttcat 240  Q
    |||||||    
T  18148188 tcttcat 18148182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 19352862 - 19352764
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatc 232  Q
    |||||| |||||| ||||||||| | ||||||||  ||||||||||  | |||||||||||||||||||||| ||||||||||||  ||| ||||||||    
T  19352862 ccattttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatgcctagatacaatgattcttttatggagtcatc 19352764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19426160 - 19426054
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| |||||| | ||||||| | ||||||||  ||||||||||| | |||||||||||||||| ||||| ||||||||||||   |||||||||||     
T  19426160 ccattttctaataaggaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatca 19426061  T
Q  234 tcttcat 240  Q
    |||||||    
T  19426060 tcttcat 19426054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19438416 - 19438310
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    ||||||||||||| |||||| || | ||||||||  ||| ||||||| | |||||||||||||||||||||| ||||| || |||| |||||| |||||     
T  19438416 ccatttcctaataagaaacatagaaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaacgactctcttatagattcatca 19438317  T
Q  234 tcttcat 240  Q
    |||||||    
T  19438316 tcttcat 19438310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 16678750 - 16678593
Alignment:
Q  71 tatttaaatttaccatcaaagttacatagagcttgtc---------atcgataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatc 160  Q
    ||||||| |||||||||||||||||||| ||||||||         ||| ||||| ||||||||||| |||| ||||||||||||| ||||||||| | |    
T  16678750 tatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccatttcctaataagaaacaaagaacc 16678651  T
Q  161 acaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattct 218  Q
    ||||||   |||||||||||   |||| |||||||||| ||| || ||||||||||||    
T  16678650 acaaataccccagaaacctaccgcaaaaccaactcccaagcccagatacaatgattct 16678593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19335482 - 19335376
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| |||||| ||||||||| | ||||||||  ||||||||||  | |||||||||||| ||| ||||| ||||||||||||| || |||||| ||     
T  19335482 ccattttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactctcatccctagatacaatgattctcttaaagagtcgtca 19335383  T
Q  234 tcttcat 240  Q
    |||||||    
T  19335382 tcttcat 19335376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 19465918 - 19465738
Alignment:
Q  48 aggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacatagagcttgtcatcgat---------aaactgatagtatgtatgcc-ccat 137  Q
    |||||||||||||  | ||||  ||||||| |||||| ||||||| ||||||||||||||| | ||         |||| || |||||| ||||| ||||    
T  19465918 aggagctcaatttctgcgaaagctatttaactttaccgtcaaagtaacatagagcttgtcacctattccatatataaaccgaaagtatgcatgcctccat 19465819  T
Q  138 ttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattct 218  Q
    ||||||||| ||||||||| | ||||||||  ||||||||||  | |||||||||||||| | | ||| ||||||||||||    
T  19465818 ttcctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccgtccttagatacaatgattct 19465738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 24493190 - 24493375
Alignment:
Q  22 tctgtttggaactacccttaaccagcaggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacatagagcttgtca---------tcga 112  Q
    |||||||||||||| ||||||| ||||||| |||| |||  ||||||  |||  || || ||||||||||||||||||| | |||||         ||||    
T  24493190 tctgtttggaactaaccttaactagcaggaactcattttctgtgaaagctat--aacttcaccatcaaagttacatagatcctgtcacccactccatcga 24493287  T
Q  113 taaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccat 199  Q
    ||||| | ||||| |  |||| ||||||||||||| |||| |||||| |||| |||||||| ||||||| |||||| |||||||||||    
T  24493288 taaaccggtagtacgcgtgcctccatttcctaataagaaataaaggaccacacatcaaccaaaaacctactccaaacccaactcccat 24493375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 17951316 - 17951209
Alignment:
Q  112 ataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtaca 210  Q
    |||||| || |||||| ||||| |||||| | |||| ||||||||| | ||||||||  ||||||||||| | ||||||| |||||||| || |||||||    
T  17951316 ataaaccgaaagtatgcatgcctccattttcgaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaaggtaca 17951217  T
Q  211 atgattct 218  Q
    ||||||||    
T  17951216 atgattct 17951209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 18109913 - 18109802
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| ||||||||| |||  |||||||| | ||||||||  ||||||||||| | ||||||| |||||||| || |||||||||||||||      
T  18109913 agtatgcatgcctccatttcctgataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaaggtacaatgattcttt 18109814  T
Q  221 tatagagtcatc 232  Q
    |||||| |||||    
T  18109813 tatagattcatc 18109802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 19355198 - 19355079
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| |||||| |||||  ||||||||| |   ||||||  ||||||||||| | |||||||||||||||||||||| ||||||||||||      
T  19355198 agtatgcatgcctccattttctaattagaaacaaagaacggcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattcttt 19355099  T
Q  221 tatagagtcatcgtcttcat 240  Q
     |||||||| || |||||||    
T  19355098 gatagagtcgtcatcttcat 19355079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 17943424 - 17943318
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| ||||||  |||||||| | ||||||||  ||| ||||||  | |||||||||| |||||||| ||||||| |||||||  ||||||||||||     
T  17943424 ccattttctaataaaaaacaaagaaccacaaatcccccaaaaacctgctgcaaatccaacccccatgccaaggtacagtgattcttttatagagtcatca 17943325  T
Q  234 tcttcat 240  Q
    |||||||    
T  17943324 tcttcat 17943318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 18017492 - 18017394
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatc 232  Q
    |||||| |||||  ||||||||| | ||||||||  ||||||||||  | |||| ||||||||||||||||| ||||||||||||  |||||| |||||    
T  18017492 ccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaagccaactcccatgcctagatacaatgattcttttatagattcatc 18017394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19401196 - 19401090
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| |||||  ||||||||| | ||||||||  ||||||||||| | ||||||| ||||||||||| |||||||| ||||||  |||||| || ||     
T  19401196 ccattttctaatgagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgccaaggtacaacgattcttttatagattcgtca 19401097  T
Q  234 tcttcat 240  Q
    |||||||    
T  19401096 tcttcat 19401090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19462650 - 19462544
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||||| |||| ||||||||| | |||||||   ||||||||||| | ||||||| |||||||||||||  ||||| || |||| |||||| |||||     
T  19462650 ccatttccgaataagaaacaaagaaccacaaatgccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatca 19462551  T
Q  234 tcttcat 240  Q
    |||||||    
T  19462550 tcttcat 19462544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 2709032 - 2709207
Alignment:
Q  73 tttaaatttaccatcaaagttacatagagcttgtca---------tcgataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcac 162  Q
    ||||| |||| |||||||||||||||||||||||||         || |||||| |||||||||| | || ||||||||||||| ||||||||||| |||    
T  2709032 tttaactttatcatcaaagttacatagagcttgtcacctactccatcaataaaccgatagtatgtgttcctccatttcctaataagaaacaaaggaccac 2709131  T
Q  163 aaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcgtcttc 238  Q
    |||||  ||| ||||||| | |||||||||||||||||||||| ||||||||||||| |||||| || ||||||||    
T  2709132 aaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaatgattctcttatagattcgtcgtcttc 2709207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 15537110 - 15536897
Alignment:
Q  37 ccttaaccagcaggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacatagagcttgtcatcga---------taaactgatagtatg 127  Q
    ||||||| ||||||||||||||||  |||||| || ||||| ||||| |||||||| ||||||| ||||||| | |         ||||| || ||||||    
T  15537110 ccttaactagcaggagctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttgtcacctactttatcagtaaaccgaaagtatg 15537011  T
Q  128 tatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatataga 226  Q
     ||||| |||||| |||||| ||||||||| | ||||||||  |||||||||||   |||||||||||||||| ||||| ||||||||||||    ||||    
T  15537010 catgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactcccatccctagatacaatgattctttgttaga 15536911  T
Q  227 gtcatcgtcttcat 240  Q
    |||||| |||||||    
T  15536910 gtcatcatcttcat 15536897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 8461135 - 8460930
Alignment:
Q  45 agcaggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacatagagcttgtca---------tcgataaactgatagtatgtatgcc-c 134  Q
    ||||||||||||||||  | ||||  || |||| |||||||||||| || ||||||||||||||         || |||||  ||||||||| ||||| |    
T  8461135 agcaggagctcaatttctgcgaaatctaattaactttaccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctc 8461036  T
Q  135 catttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcgt 234  Q
    |||||||||||| ||||||||| | ||||||||  ||| ||||| | | ||||||||||||||||||| || ||||||||||||| |||||||||||| |    
T  8461035 catttcctaataagaaacaaagaaccacaaatcccccaaaaacccactgcaaatccaactcccatgccaagatacaatgattctcttatagagtcatcat 8460936  T
Q  235 cttcat 240  Q
    ||||||    
T  8460935 cttcat 8460930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University