View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_high_18 (Length: 238)
Name: NF4685_high_18
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43116867 - 43117088
Alignment:
| Q |
1 |
gatctctacagaaactcctatggccacaacaacacccttccagtttaaatttaaaaggcacatactcaatacaatagttgaagattaaccaacataaacc |
100 |
Q |
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| T |
43116867 |
gatctctactgaaactcctacagccaaaacaacacccttccggtttaaatttaaaaggcacatactcaatacaatagttgaagattaaccaacataaacc |
43116966 |
T |
|
| Q |
101 |
aaatacaatgaaagnnnnnnnntgacacctttatagttctatacttctattttatcaagcaccacctaaatctaatgtaacagtaaccaacattttcatt |
200 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43116967 |
aaatacaatgaaagaaaaaaaatgacacctttatagttctatacttctattttatcaagcaccacctaaatctaatgtaacagtaaccaacaatttcatt |
43117066 |
T |
|
| Q |
201 |
cattcctatctctcaagagtat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43117067 |
cattcctatctctcaagagtat |
43117088 |
T |
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