View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685_high_23 (Length: 228)

Name: NF4685_high_23
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685_high_23
NF4685_high_23
[»] chr4 (5 HSPs)
chr4 (99-210)||(33987100-33987210)
chr4 (21-84)||(33986988-33987051)
chr4 (164-210)||(20309611-20309657)
chr4 (160-210)||(9423947-9423997)
chr4 (169-210)||(50399091-50399132)
[»] chr5 (6 HSPs)
chr5 (160-210)||(22975105-22975155)
chr5 (160-210)||(3886696-3886746)
chr5 (160-210)||(22556537-22556587)
chr5 (160-210)||(22556970-22557020)
chr5 (160-209)||(43356714-43356762)
chr5 (170-210)||(20039579-20039619)
[»] chr3 (5 HSPs)
chr3 (160-210)||(31284371-31284421)
chr3 (160-210)||(41472302-41472352)
chr3 (163-210)||(41473998-41474045)
chr3 (160-210)||(7477192-7477242)
chr3 (164-210)||(20885216-20885262)
[»] chr1 (5 HSPs)
chr1 (160-210)||(2634925-2634975)
chr1 (160-210)||(20061286-20061336)
chr1 (160-210)||(35759703-35759753)
chr1 (160-210)||(35761009-35761059)
chr1 (160-200)||(843028-843068)
[»] chr7 (3 HSPs)
chr7 (160-210)||(42515093-42515143)
chr7 (160-210)||(2193257-2193307)
chr7 (160-210)||(11517483-11517533)
[»] chr2 (7 HSPs)
chr2 (160-210)||(1953156-1953206)
chr2 (160-210)||(24818327-24818377)
chr2 (160-210)||(25338092-25338142)
chr2 (160-210)||(29259715-29259765)
chr2 (169-210)||(5399921-5399962)
chr2 (102-135)||(27882992-27883025)
chr2 (169-201)||(8073902-8073934)
[»] scaffold0022 (1 HSPs)
scaffold0022 (160-207)||(162773-162820)
[»] scaffold0322 (2 HSPs)
scaffold0322 (160-210)||(18216-18266)
scaffold0322 (160-210)||(18967-19017)
[»] scaffold0047 (1 HSPs)
scaffold0047 (164-210)||(18233-18279)
[»] scaffold0018 (1 HSPs)
scaffold0018 (160-210)||(10301-10351)
[»] scaffold0007 (1 HSPs)
scaffold0007 (164-210)||(142373-142419)
[»] chr6 (7 HSPs)
chr6 (160-210)||(7912311-7912361)
chr6 (160-210)||(9440404-9440454)
chr6 (164-210)||(9440527-9440573)
chr6 (160-210)||(17027626-17027676)
chr6 (160-210)||(17731208-17731258)
chr6 (160-210)||(17850919-17850969)
chr6 (160-210)||(20850322-20850372)
[»] scaffold0664 (1 HSPs)
scaffold0664 (102-135)||(4048-4081)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 33987100 - 33987210
Alignment:
Q  99 ataaaacaattcttataagcattccttaaacaatgcaatcactcttgacnnnnnnnnnntaatgcagtcacatacctgcacgatctcatgatccctctca 198  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||          ||||| |||||||||||||||||||||||||||||||||||    
T  33987100 ataaaacaattcttataagccttccttaaacaatgcagtcactcttgacaaaaaaaaa-taatgtagtcacatacctgcacgatctcatgatccctctca 33987198  T
Q  199 ttccgatgtgat 210  Q
    ||||||||||||    
T  33987199 ttccgatgtgat 33987210  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 33986988 - 33987051
Alignment:
Q  21 ctattcctgtaacatctaagacgatttaagtatcatcgactgattccacaaaccaacacaagtt 84  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  33986988 ctattcctttaacatctaagacgatttaagtattgtcgactgattccacaaaccaacacaagtt 33987051  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 20309611 - 20309657
Alignment:
Q  164 agtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||||||||||   |||||||||||||||||||||||||||||    
T  20309611 agtcacatacctgcaaagtctcatgatccctctcattccgatgtgat 20309657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 9423947 - 9423997
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||| ||||||| |||| |||||||||||||||| ||||||    
T  9423947 atgcagtcccatacatgcacgacctcaggatccctctcattccggtgtgat 9423997  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 50399091 - 50399132
Alignment:
Q  169 catacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    ||||||| |||| ||||| |||||||||||||||||||||||    
T  50399091 catacctacacggtctcaggatccctctcattccgatgtgat 50399132  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 22975105 - 22975155
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||    
T  22975105 atgcagtcacatacctgcacggcctcaggatccctctcattccgatgtgat 22975155  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 3886696 - 3886746
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||| || |||| |||| |||||||||||||||||||||||    
T  3886696 atgcagtcccatacttgtacgacctcaggatccctctcattccgatgtgat 3886746  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 22556587 - 22556537
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  |||| || ||||||||||||||||||||    
T  22556587 atgcagtcccatacctgcacggcctcaggaaccctctcattccgatgtgat 22556537  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 22557020 - 22556970
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  ||||||| | ||||||||||||||||||    
T  22557020 atgcagtcccatacctgcacggcctcatgaactctctcattccgatgtgat 22556970  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 43356714 - 43356762
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtga 209  Q
    |||||||| |||||||||| ||||||| || |||||||||||||||||||    
T  43356714 atgcagtctcatacctgcatgatctcagga-ccctctcattccgatgtga 43356762  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 20039579 - 20039619
Alignment:
Q  170 atacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  20039579 atacctacacggcctcatgatccctctcattccgatgtgat 20039619  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 31284371 - 31284421
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  31284371 atgcagtcccatacctgcacgacctcaagatccctctcattccgatgtgat 31284421  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 41472352 - 41472302
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| |||||||| |||| |||| |||||||||||||||||||||||    
T  41472352 atgcagtctcatacctgtacgacctcaggatccctctcattccgatgtgat 41472302  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 41474045 - 41473998
Alignment:
Q  163 cagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||||||||| |||| |||| ||||||||||||| |||||||||    
T  41474045 cagtcacatacctgaacgacctcaagatccctctcatttcgatgtgat 41473998  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 7477242 - 7477192
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| |||||||||||||  | | |||||||||||||||||||||||    
T  7477242 atgcagtctcatacctgcacgactttaggatccctctcattccgatgtgat 7477192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 20885216 - 20885262
Alignment:
Q  164 agtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||||||| ||||| |||| ||||||||||||| |||||||||    
T  20885216 agtcacatacctacacgacctcaagatccctctcattgcgatgtgat 20885262  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 2634975 - 2634925
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  2634975 atgcagtcccatacctgcacaacctcatgatccctctcattccgatgtgat 2634925  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 20061286 - 20061336
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||| |||| |||||||||||||| ||||||||    
T  20061286 atgcagtcccatacctgcacgacctcaggatccctctcattctgatgtgat 20061336  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 35759703 - 35759753
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  35759703 atgcagtcccatacctgcacggcctcaggatccctctcattccgatgtgat 35759753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 35761009 - 35761059
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  35761009 atgcagtctcatacctgcacggcctcaggatccctctcattccgatgtgat 35761059  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 843028 - 843068
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcatt 200  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  843028 atgcagacacatacctacacgatctcatgatccctctcatt 843068  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 42515143 - 42515093
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  42515143 atgcagtctcatacctgcacggcctcaggatccctctcattccgatgtgat 42515093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 2193307 - 2193257
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| |||||||||||| ||||| || ||||||||||||| ||||||    
T  2193307 atgcagtcccatacctgcacggtctcaggaaccctctcattccggtgtgat 2193257  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 11517483 - 11517533
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| |||||||| |||  |||| |||||||||||||||||||||||    
T  11517483 atgcagtcccatacctgtacggcctcaggatccctctcattccgatgtgat 11517533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 1953206 - 1953156
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||||||||    
T  1953206 atgcagtctcatacctgcacgacttcaggatccctctcattccgatgtgat 1953156  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 24818377 - 24818327
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||| ||||||  |||| |||||||||||||||||||||||    
T  24818377 atgcagtcccatacatgcacggcctcaggatccctctcattccgatgtgat 24818327  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 25338092 - 25338142
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||| |||| || ||||||||||||| ||||||    
T  25338092 atgcagtcccatacctgcacgacctcaggaaccctctcattccggtgtgat 25338142  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 29259715 - 29259765
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||| || ||| ||||| |||||||||||||||||||||||    
T  29259715 atgcagtcccatacttgtacggtctcaggatccctctcattccgatgtgat 29259765  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 5399921 - 5399962
Alignment:
Q  169 catacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    ||||| ||||||| |||| |||||||||||||||||||||||    
T  5399921 catacttgcacgacctcaagatccctctcattccgatgtgat 5399962  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 27882992 - 27883025
Alignment:
Q  102 aaacaattcttataagcattccttaaacaatgca 135  Q
    |||||||||||||||||||||||| |||||||||    
T  27882992 aaacaattcttataagcattccttcaacaatgca 27883025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 8073934 - 8073902
Alignment:
Q  169 catacctgcacgatctcatgatccctctcattc 201  Q
    ||||||||||| |||||||||||||||||||||    
T  8073934 catacctgcacaatctcatgatccctctcattc 8073902  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 162773 - 162820
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgt 207  Q
    ||||||||||||||||| |||  |||| ||||||||||||||||||||    
T  162773 atgcagtcacatacctgtacggcctcaggatccctctcattccgatgt 162820  T

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Target: scaffold0322 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 18216 - 18266
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  |||  |||||||||||||||||||||||    
T  18216 atgcagtcccatacctgcacggcctctggatccctctcattccgatgtgat 18266  T

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Target: scaffold0322; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 19017 - 18967
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  |||  |||||||||||||||||||||||    
T  19017 atgcagtcccatacctgcacggcctctggatccctctcattccgatgtgat 18967  T

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Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 18233 - 18279
Alignment:
Q  164 agtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||||||| ||||  |||| |||||||||||||||||||||||    
T  18233 agtcacatacctacacggcctcaggatccctctcattccgatgtgat 18279  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 10351 - 10301
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||| ||||||  |||| |||||||||||||||||||||||    
T  10351 atgcagtcccatacatgcacggcctcaggatccctctcattccgatgtgat 10301  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 142373 - 142419
Alignment:
Q  164 agtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||| ||||||||||||  |||| |||||||||||||||||||||||    
T  142373 agtcccatacctgcacggcctcaggatccctctcattccgatgtgat 142419  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 7912361 - 7912311
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  |||  |||||||||||||||||||||||    
T  7912361 atgcagtcccatacctgcacggcctcgagatccctctcattccgatgtgat 7912311  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 9440404 - 9440454
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||  |||||||||||||  ||| |||||||||||||||||||||||    
T  9440404 atgcagttccatacctgcacgacttcaggatccctctcattccgatgtgat 9440454  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 9440527 - 9440573
Alignment:
Q  164 agtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||| |||||||||||||  ||| |||||||||||||||||||||||    
T  9440527 agtcccatacctgcacgacttcaggatccctctcattccgatgtgat 9440573  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 17027626 - 17027676
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  |||  |||||||||||||||||||||||    
T  17027626 atgcagtcccatacctgcacggcctctggatccctctcattccgatgtgat 17027676  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 17731208 - 17731258
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| |||||||| |||  |||| |||||||||||||||||||||||    
T  17731208 atgcagtcccatacctgaacggcctcaggatccctctcattccgatgtgat 17731258  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 17850969 - 17850919
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||| ||||||| |||| |||||||||||||||| ||||||    
T  17850969 atgcagtcccatacttgcacgacctcaggatccctctcattccggtgtgat 17850919  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 20850372 - 20850322
Alignment:
Q  160 atgcagtcacatacctgcacgatctcatgatccctctcattccgatgtgat 210  Q
    |||||||| ||||||||||||  ||||||| ||||||||||||| ||||||    
T  20850372 atgcagtcccatacctgcacggcctcatgaaccctctcattccggtgtgat 20850322  T

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Target: scaffold0664 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 4048 - 4081
Alignment:
Q  102 aaacaattcttataagcattccttaaacaatgca 135  Q
    |||||||||||||||||||||||| |||||||||    
T  4048 aaacaattcttataagcattccttcaacaatgca 4081  T

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