View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_high_26 (Length: 219)
Name: NF4685_high_26
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 28017821 - 28017993
Alignment:
| Q |
24 |
aatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataa |
123 |
Q |
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| T |
28017821 |
aatatctattatcaaaaccatgtctctgacatcatgatttg-ttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaaggtaa |
28017919 |
T |
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| Q |
124 |
ttcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattg |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
28017920 |
ttcaggatgcatggagaaacatgaagaagtgtctaattcaagc---taatgccacacaaaatgattatcaaacattg |
28017993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 28047460 - 28047633
Alignment:
| Q |
24 |
aatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataa |
123 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| | || |
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| T |
28047460 |
aatatctattatcaaaaccatgtctctgacatcatgatttggttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaacagaa |
28047559 |
T |
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| Q |
124 |
ttcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattg |
200 |
Q |
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| T |
28047560 |
ttcaggttgcatggagaagcaggaagaagcgtctaagacgagc---taataccacacaaaattattatcaaacattg |
28047633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 58 - 199
Target Start/End: Original strand, 28074634 - 28074772
Alignment:
| Q |
58 |
tgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtct |
157 |
Q |
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| T |
28074634 |
tgatttggttgttgtgttatgttaggtatgaatcaccttattggagattccttgcagcaaaaagaattcaggatgcatggagaaacatgaagaagtgtct |
28074733 |
T |
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| Q |
158 |
aattcaagctaataataccacacaaaatgattatcaaacatt |
199 |
Q |
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| T |
28074734 |
aagtcaagc---taataccacacaaaatgattatcaaacatt |
28074772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 27917176 - 27917349
Alignment:
| Q |
24 |
aatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataa |
123 |
Q |
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| T |
27917176 |
aatatctcttatcataactatgtctctgacatcatgatatggttgttgtgttatgttaggtatgaatcaccttattggagatcccttgcagcaacgagaa |
27917275 |
T |
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| Q |
124 |
ttcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattg |
200 |
Q |
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| T |
27917276 |
ttcaggttgcatggagatacaggaagaagcgtctaaggccagc---aaataccacacaaaatgattatcaaacattg |
27917349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 28035576 - 28035737
Alignment:
| Q |
34 |
atcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgc |
133 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||| | |||||||| ||| |
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| T |
28035576 |
atcaaaaccatggctctgacatcatgatttggttgttgtgtcatgttaggtatcaatcaccttattggagatcacttgcagcaaacagaattcaggttgc |
28035675 |
T |
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| Q |
134 |
atggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacat |
198 |
Q |
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|||||| | | ||||||| |||||| |||||| |||||||||||||||| |||||||||||| |
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| T |
28035676 |
atggagcaataggaagaagcgtctaagtcaagc---taataccacacaaaataattatcaaacat |
28035737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 28091631 - 28091783
Alignment:
| Q |
42 |
catgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagat |
141 |
Q |
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|||| ||||||||| ||||||||||| | |||| ||||||||||||||| |||| |||||||||| ||||||||| | ||||| || ||||||||||| |
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| T |
28091631 |
catgactctgacatgatgatttggttat---gttatgttaggtatgaatcaacttactggagatcacttgcagcaaatagaattcgggttgcatggagat |
28091727 |
T |
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| Q |
142 |
acatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattg |
200 |
Q |
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||| |||||| |||||| | |||| ||||||||||||||||||||||||||||||| |
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| T |
28091728 |
acaggaagaaacgtctaagtaaagc---taataccacacaaaatgattatcaaacattg |
28091783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 27922091 - 27922165
Alignment:
| Q |
34 |
atcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcac |
108 |
Q |
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|||||||||||| ||||||||| |||||||| | |||||||| |||||||||||||| |||||| ||| ||||| |
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| T |
27922091 |
atcaaaaccatggctctgacataatgatttgatgattgtgttatgttaggtatgaatcgccttatgggaaatcac |
27922165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 28018603 - 28018711
Alignment:
| Q |
34 |
atcaaaaccatgtctctgacatcatgatttg--gttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggat |
131 |
Q |
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|||||||||||| ||||||||| ||||||| | | |||||||| |||||||||||||| |||||| ||| ||||| | | |||| | |||||||| | |
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| T |
28018603 |
atcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaaatcacatagaccaaacagaattcaggtt |
28018702 |
T |
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| Q |
132 |
gcatggaga |
140 |
Q |
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| T |
28018703 |
gcatggaga |
28018711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 28534354 - 28534418
Alignment:
| Q |
78 |
gttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagata |
142 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||| |
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| T |
28534354 |
gttaggtatgaatcaccttattggagatccctagcagcaacccgaattcaggttgcatggagata |
28534418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 1440036 - 1440198
Alignment:
| Q |
35 |
tcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgca |
134 |
Q |
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| T |
1440036 |
tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca |
1440135 |
T |
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| Q |
135 |
tggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattg |
200 |
Q |
| |
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|||||||||| ||||||| |||||| || ||| |||||||| |||||||||||||||||||||| |
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| T |
1440136 |
tggagatacaggaagaagcgtctaagtcgagc---taataccagacaaaatgattatcaaacattg |
1440198 |
T |
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