View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_high_3 (Length: 386)
Name: NF4685_high_3
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 163 - 373
Target Start/End: Original strand, 9234363 - 9234573
Alignment:
| Q |
163 |
agtaagtctttggaaatggttattcatatggagggtatagctatctacatcagttatgtatggaactttgctccatgtcagcatatatatacatgttgaa |
262 |
Q |
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| T |
9234363 |
agtaagtctttggaaatggttattcatatggagggtatagctatctacatcagttatgtatggaactttactccatgtcagcatatatatacatgctgaa |
9234462 |
T |
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| Q |
263 |
tggtggacatctgatgtgaaatttcattccatgagttgtgtattgaagtgatcagctataaggtgctatggttcttgggaaggttacatgagtttttcat |
362 |
Q |
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| T |
9234463 |
tggtggacatgtgatgtgaaatttcattccatgagttgtgtattgaagtgatcagctataaggtgctatggttcttgggaaggttacatgagtttttcat |
9234562 |
T |
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| Q |
363 |
ggtgtgttcct |
373 |
Q |
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| T |
9234563 |
ggtgtgttcct |
9234573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 9234219 - 9234302
Alignment:
| Q |
19 |
atggaattgatgaaaaagagagattaaattaatggttctagttgttgggatcgggtctaccattttgcatgtcgaagttgaaaa |
102 |
Q |
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| T |
9234219 |
atggaattgatgaaaaagagagattaaattaatggttctagttgttgggatcgggtctaccattttgcatgtcgaggttgaaaa |
9234302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 9245933 - 9246010
Alignment:
| Q |
293 |
atgagttgtgtattgaagtgatcagctataaggtgctatggttcttgggaaggttacatgagtttttcatggtgtgtt |
370 |
Q |
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| T |
9245933 |
atgagtcgtgtattgaagtcatcaactataaggtgatatggttcttgggaaggttccatgactttgtcgtagtgtgtt |
9246010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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