View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685_high_8 (Length: 310)

Name: NF4685_high_8
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685_high_8
NF4685_high_8
[»] chr3 (10 HSPs)
chr3 (8-171)||(6255374-6255536)
chr3 (166-238)||(6139069-6139141)
chr3 (166-238)||(6164384-6164456)
chr3 (12-97)||(6858809-6858894)
chr3 (166-238)||(13282954-13283031)
chr3 (15-176)||(8572515-8572683)
chr3 (8-77)||(6412773-6412842)
chr3 (8-77)||(6595221-6595290)
chr3 (8-77)||(6726069-6726138)
chr3 (8-77)||(7747393-7747462)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 6255374 - 6255536
Alignment:
Q  8 agcaacaaatctactgcagcgatataa--tcataaaaacaagtttaaaaaagaaaatgattgtttgcttgtcctttggagtgatagaacactatcagcct 105  Q
    ||||||||||||| |||||| |||||   ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||   |||||| |||    
T  6255374 agcaacaaatctattgcagcaatatatagtcataaaaacaagtttaaagaagaaaatgattgtttgcttgtctgttggagtgatagactgctatcaacct 6255473  T
Q  106 ggaattttaagagatgaatgttcaaatttatgttgtggaatatatgaaggtcaccttgcattgttt 171  Q
    ||||||||| |||||||| ||| | || |||||  |||||||||||||||||||||||||| ||||    
T  6255474 ggaattttaggagatgaa-gttgatatatatgt--tggaatatatgaaggtcaccttgcatcgttt 6255536  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6139069 - 6139141
Alignment:
Q  166 ttgtttcattattaggacatagatttcaaggtttatgaagtgaaataatcaacaagacaggaagatggatggg 238  Q
    |||||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  6139069 ttgtttcattattaggccatagatttcaagatttataaattgaaataatcaacaagacaggaagatggatggg 6139141  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6164384 - 6164456
Alignment:
Q  166 ttgtttcattattaggacatagatttcaaggtttatgaagtgaaataatcaacaagacaggaagatggatggg 238  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  6164384 ttgtttcattattaggccattgatttcaagatttatgaagtgaaataatcaacaagacaggaggatggatggg 6164456  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 6858894 - 6858809
Alignment:
Q  12 acaaatctactgcagcgatataatcataaaaacaagtttaaaaaagaaaatgattgtttgcttgtcctttggagtgatagaacact 97  Q
    ||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||| |||||   ||||||||| ||| ||||    
T  6858894 acaaatctattgcagcgatatagtcataaatacaagtttaaagaagaaaatgattgtttacttgtttgttggagtgacagaccact 6858809  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 13283031 - 13282954
Alignment:
Q  166 ttgtttcattattaggacatagatttcaaggtttatgaagtgaaa-----taatcaacaagacaggaagatggatggg 238  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||     ||||||||||||||||||||||||||||    
T  13283031 ttgttttattattaggccatagatttcaagatttatgaagtgaaatggagtaatcaacaagacaggaagatggatggg 13282954  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 8572683 - 8572515
Alignment:
Q  15 aatctactgcagcgatataatcataaaaacaagtttaaaaaagaaaatgattgtttgcttgtcctttggagtgatagaacac---------tatcagcct 105  Q
    |||||| |||||||||||| ||| ||| ||||||||||| |||| ||||||||||||||||||   |||||||||||| |||         |||| ||||    
T  8572683 aatctattgcagcgatatagtcacaaatacaagtttaaagaagagaatgattgtttgcttgtctgctggagtgatagaccactcttttctgtatccgcct 8572584  T
Q  106 ggaattttaagagatgaatgttcaaatttatgttgtggaatatatgaaggtcaccttgcattgtttcatta 176  Q
    |||| |||| |||||||||||||| || |||||  ||||||||   ||  || ||||||||||||||||||    
T  8572583 ggaaatttaggagatgaatgttcatatatatgt--tggaatatgaaaaattccccttgcattgtttcatta 8572515  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 6412842 - 6412773
Alignment:
Q  8 agcaacaaatctactgcagcgatataatcataaaaacaagtttaaaaaagaaaatgattgtttgcttgtc 77  Q
    |||||| |||||| |||||||||||| ||| ||  ||||||||||| ||||| |||||||||||||||||    
T  6412842 agcaactaatctattgcagcgatatagtcacaagtacaagtttaaagaagaacatgattgtttgcttgtc 6412773  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 6595290 - 6595221
Alignment:
Q  8 agcaacaaatctactgcagcgatataatcataaaaacaagtttaaaaaagaaaatgattgtttgcttgtc 77  Q
    |||||| |||||| |||||||||||| ||| ||  ||||||||||| ||||| |||||||||||||||||    
T  6595290 agcaactaatctattgcagcgatatagtcacaagtacaagtttaaagaagaacatgattgtttgcttgtc 6595221  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 6726138 - 6726069
Alignment:
Q  8 agcaacaaatctactgcagcgatataatcataaaaacaagtttaaaaaagaaaatgattgtttgcttgtc 77  Q
    |||||| |||||| |||||||||||| ||| ||  ||||||||||| ||||| |||||||||||||||||    
T  6726138 agcaactaatctattgcagcgatatagtcacaagtacaagtttaaagaagaacatgattgtttgcttgtc 6726069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 7747393 - 7747462
Alignment:
Q  8 agcaacaaatctactgcagcgatataatcataaaaacaagtttaaaaaagaaaatgattgtttgcttgtc 77  Q
    |||||| |||||| ||||  |||||| || |||| ||||||||||  |||||| ||||||||||||||||    
T  7747393 agcaactaatctattgcattgatatagtcgtaaatacaagtttaacgaagaaactgattgtttgcttgtc 7747462  T

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