View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685_low_1 (Length: 582)

Name: NF4685_low_1
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685_low_1
NF4685_low_1
[»] chr8 (16 HSPs)
chr8 (229-566)||(17067970-17068305)
chr8 (229-566)||(17580052-17580387)
chr8 (1-438)||(29054462-29054892)
chr8 (17-438)||(10861549-10861952)
chr8 (1-369)||(17630911-17631261)
chr8 (1-438)||(21075900-21076299)
chr8 (1-438)||(20289270-20289669)
chr8 (1-369)||(34964497-34964843)
chr8 (1-166)||(17068340-17068504)
chr8 (1-166)||(17579769-17579933)
chr8 (229-313)||(17579968-17580052)
chr8 (348-439)||(10786846-10786937)
chr8 (4-138)||(3046548-3046681)
chr8 (234-288)||(3046830-3046884)
chr8 (230-280)||(44718711-44718762)
chr8 (150-204)||(3046756-3046810)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-433)||(37799-38223)
[»] chr2 (6 HSPs)
chr2 (1-439)||(14811174-14811605)
chr2 (1-439)||(14314135-14314562)
chr2 (373-432)||(27709937-27709996)
chr2 (33-94)||(29081152-29081213)
chr2 (373-438)||(32751109-32751174)
chr2 (1-34)||(13043633-13043666)
[»] chr7 (25 HSPs)
chr7 (9-439)||(30947455-30947881)
chr7 (1-438)||(19928002-19928419)
chr7 (1-360)||(25443577-25443927)
chr7 (120-438)||(40819769-40820069)
chr7 (145-438)||(37245166-37245443)
chr7 (236-438)||(26279779-26279982)
chr7 (1-90)||(40819679-40819768)
chr7 (1-89)||(26279693-26279781)
chr7 (5-94)||(22293075-22293164)
chr7 (23-94)||(22205102-22205173)
chr7 (23-94)||(22229566-22229637)
chr7 (57-149)||(37243003-37243094)
chr7 (373-438)||(25443519-25443584)
chr7 (373-438)||(22205404-22205469)
chr7 (373-438)||(22229270-22229335)
chr7 (234-286)||(45280729-45280781)
chr7 (3-94)||(45280984-45281075)
chr7 (234-288)||(15043301-15043355)
chr7 (234-288)||(26279858-26279912)
chr7 (234-288)||(36630392-36630446)
chr7 (234-288)||(36630251-36630305)
chr7 (231-288)||(22205352-22205409)
chr7 (231-288)||(22229330-22229387)
chr7 (283-369)||(15043269-15043356)
chr7 (154-204)||(45280804-45280854)
[»] chr3 (18 HSPs)
chr3 (1-439)||(4533370-4533799)
chr3 (1-438)||(39579803-39580222)
chr3 (1-360)||(958813-959164)
chr3 (1-438)||(39674088-39674506)
chr3 (1-364)||(25041311-25041668)
chr3 (1-438)||(53330438-53330860)
chr3 (1-438)||(53334122-53334544)
chr3 (1-438)||(53337799-53338221)
chr3 (1-287)||(42864321-42864599)
chr3 (4-146)||(22976533-22976673)
chr3 (321-438)||(42864250-42864368)
chr3 (354-438)||(53363115-53363199)
chr3 (374-433)||(27391352-27391411)
chr3 (234-287)||(25041308-25041361)
chr3 (150-203)||(29359793-29359846)
chr3 (1-36)||(21869148-21869183)
chr3 (373-425)||(24645647-24645699)
chr3 (375-431)||(41530477-41530533)
[»] chr6 (3 HSPs)
chr6 (1-439)||(21111998-21112417)
chr6 (1-438)||(8861950-8862359)
chr6 (109-438)||(11382414-11382737)
[»] chr1 (6 HSPs)
chr1 (1-433)||(46397845-46398266)
chr1 (15-134)||(33368975-33369092)
chr1 (230-288)||(23206306-23206363)
chr1 (373-433)||(29096172-29096232)
chr1 (234-278)||(33368779-33368823)
chr1 (242-288)||(29096227-29096273)
[»] chr5 (8 HSPs)
chr5 (25-438)||(36606086-36606480)
chr5 (1-299)||(8871283-8871573)
chr5 (1-204)||(13854441-13854644)
chr5 (4-146)||(6665857-6665998)
chr5 (283-438)||(6665622-6665776)
chr5 (1-146)||(32659069-32659213)
chr5 (235-288)||(6665692-6665745)
chr5 (389-438)||(8871240-8871289)
[»] chr4 (5 HSPs)
chr4 (1-344)||(54260130-54260454)
chr4 (366-438)||(563343-563415)
chr4 (235-281)||(26261054-26261100)
chr4 (40-90)||(26261273-26261323)
chr4 (401-438)||(54260056-54260093)
[»] scaffold0274 (2 HSPs)
scaffold0274 (366-433)||(14430-14497)
scaffold0274 (255-288)||(14409-14442)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 229 - 566
Target Start/End: Complemental strand, 17068305 - 17067970
Alignment:
Q  229 ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatatt 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  17068305 ccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatatt 17068206  T
Q  329 aattgcccgatacttt-ccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcg 427  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17068205 aattgcccgatacttttccgatacctgtatcgggacgtatcgaggcgtattggtatcggatacgtgtcagatacgatacttcaccatttttggagtatcg 17068106  T
Q  428 gggcttgagagagagaatagctcactaccaatttgatcatttgattaatgtttccttccttataaacaactacaggaaaagtttcgggctgtactaaatg 527  Q
    |||||| |   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17068105 gggcttca---agagaatagctcattaccaatttgatcatttgattaatgtttccttccttataaacaactacaggaaaagtttcggactgcactaaatg 17068009  T
Q  528 ttcaaagagcagctttacattttcactcgactgctattg 566  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  17068008 ttcaaagagcagctttacattttcacccgactgctattg 17067970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 229 - 566
Target Start/End: Original strand, 17580052 - 17580387
Alignment:
Q  229 ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatatt 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  17580052 ccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatatt 17580151  T
Q  329 aattgcccgatacttt-ccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcg 427  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17580152 aattgcccgatacttttccgatacctgtatcgggacgtatcgaggcgtattggtatcggatacgtgtcagatacgatacttcaccatttttggagtatcg 17580251  T
Q  428 gggcttgagagagagaatagctcactaccaatttgatcatttgattaatgtttccttccttataaacaactacaggaaaagtttcgggctgtactaaatg 527  Q
    |||||| |   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17580252 gggcttca---agagaatagctcattaccaatttgatcatttgattaatgtttccttccttataaacaactacaggaaaagtttcggactgcactaaatg 17580348  T
Q  528 ttcaaagagcagctttacattttcactcgactgctattg 566  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  17580349 ttcaaagagcagctttacattttcacccgactgctattg 17580387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 29054892 - 29054462
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctatt--gctatgtggtgacgagaaaccctannnn 98  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||        
T  29054892 taacattagagagaagagaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattttgctatgtggtgacgagaaaccctatttt 29054793  T
Q  99 nnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatcc 198  Q
        ||||||||||||| ||||||||||||||| |||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  29054792 tt--aggttagaagagacaatatgattttgataacgctgccaaacttgataggtgttggagtataagtaagctgtgtcggagtacaagttagtcgtatcc 29054695  T
Q  199 gacacggcgacacgtatcggtcannnnnnn-ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgta 297  Q
    ||||||        ||| |||||        ||||||| ||||||||||||| |||  |||||||| || ||||||||||||||||||||||||||||||    
T  29054694 gacacg--------tataggtcattttttttccttcaataaataaatattaactgtctgatacttcaccaatacgcgtatcgggacgtatccgacacgta 29054603  T
Q  298 tcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtca 396  Q
    || |||||||||||||       ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||     
T  29054602 tcagtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcgggacgtatcgaggcgtatc-gtatcggatacgtgtcg 29054504  T
Q  397 gattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  29054503 gatacgatacttcaccatttttggagtatcggggcttgagag 29054462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 10861549 - 10861952
Alignment:
Q  17 agaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagat 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||     
T  10861549 agaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatattttt-aggttagaagagag 10861647  T
Q  117 aatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatc 216  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||||    
T  10861648 aatatgattttgagagcgctgccagacctgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacg--------tatc 10861739  T
Q  217 ggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnn 316  Q
    |||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       
T  10861740 ggtcatttttttccttcaaaaaataaatattaattgtccgatacttctccgatacgcgtatcggcacgtatccgacacgtatcggtcattgtttttcaaa 10861839  T
Q  317 nnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatt 415  Q
        |||||||||||||||| |||| ||||||||||| ||||||| |           |||||||||||||||| ||||| | | |||||||||||||||    
T  10861840 aaaataaatattaattgcccaatacttttccgatacccgtatcggaa----------tgtatcggtatcggatatgtgtcggttacgatacttcaccatt 10861929  T
Q  416 tttggagtatcggggcttgagag 438  Q
    |||||||||||||||||| ||||    
T  10861930 tttggagtatcggggcttcagag 10861952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 17630911 - 17631261
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||          
T  17630911 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatttggtgacgagaaacccta-ttttt 17631009  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  17631010 ttaggttagaagagacaatatgattttgatagcgttgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatc--- 17631106  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
         ||||||||||||||||        ||||||||||||||||||||| ||           |||||||| |||||||||||||||| ||||||||||    
T  17631107 -----cgacacgtatcggtcattttttttccttcaaaaaataaatattaactg-----------tccgatacacgtatcgggacgtatctgacacgtatc 17631190  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcg 369  Q
    ||||||||||||||       ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||    
T  17631191 ggtcattgtttttcaaaaaaataaatattaattgcctgatacttttccgatacccgtatcgggacgtatcg 17631261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 21076299 - 21075900
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  21076299 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-ttttt 21076201  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  21076200 ttaggttagaaaagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatc--- 21076104  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
         ||||||||||||||||        ||||||||||||||||||||| ||| |||||||||||||||||||||||                     |    
T  21076103 -----cgacacgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtat---------------------c 21076030  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcaga 398  Q
    ||||||||||||||       ||||||||||||||||||||| ||||||||| | |||||||||          |||||||||||| |||||||||| ||    
T  21076029 ggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatagccgtatcggga----------cgtatcggtatccgatacgtgtcgga 21075940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 20289669 - 20289270
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||          
T  20289669 taacattagagagaagagaaacagagtagaattcaattagtgttaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 20289570  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20289569 t-aggttagaaaagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccga 20289471  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
            |||||||||||||        ||||||||||||||||||||| ||| |||||||||||||||||||||||                     |    
T  20289470 --------cacgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtat---------------------c 20289400  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcaga 398  Q
    ||||||||||||||       ||||||||||||||||||||| ||||||||| | |||||||||          |||||||||||| |||||||||| ||    
T  20289399 ggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatagccgtatcggga----------cgtatcggtatccgatacgtgtcgga 20289310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 34964497 - 34964843
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||          
T  34964497 taacattagagagaagagaaacatagtagaattcaatcaaaggtaatggttagaagagagaatagctattgctatgcggtgacgagaaacccta-ttttt 34964595  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||           ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  34964596 ttaggttagaagag-----------ttgatagcgctgccaaacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatc--- 34964681  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
         |||||| |||||||||        |||||||||||||||||||||   | ||||||||||||||||||| |||||||    ||||||||||||||    
T  34964682 -----cgacacatatcggtcattttttttccttcaaaaaataaatattaaccatccgatacttctccgatacgcatatcggg----atccgacacgtatc 34964772  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcg 369  Q
    ||||||||||||||       ||||||||||||||||||||| ||||||||||| ||||||| ||| ||||    
T  34964773 ggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcggaacgtatcg 34964843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 17068504 - 17068340
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  17068504 taacattagagagaagagaaacagagtaaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-ttttt 17068406  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagt 166  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17068405 ttaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtacaagt 17068340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 17579769 - 17579933
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  17579769 taacattagagagaagagaaacagagtaaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-ttttt 17579867  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagt 166  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17579868 ttaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtacaagt 17579933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 17579968 - 17580052
Alignment:
Q  229 ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttc 313  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17579968 ccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattttttttc 17580052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 348 - 439
Target Start/End: Original strand, 10786846 - 10786937
Alignment:
Q  348 atacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagaga 439  Q
    ||||||||||||||||| || | ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  10786846 atacctgtatcgggacgtattggggcgtctcggtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggcttgagaga 10786937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 3046548 - 3046681
Alignment:
Q  4 cattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnna 103  Q
    ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| | ||||||||||||||||||||||             
T  3046548 cattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgttatgtggtgacgagaaaccctatttttttg- 3046646  T
Q  104 ggttagaagagataatatgattttgatagcgctgc 138  Q
    |||||||||||| |||||| |||||||||||||||    
T  3046647 ggttagaagagacaatatgtttttgatagcgctgc 3046681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 3046830 - 3046884
Alignment:
Q  234 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    |||||||||||||||||||  | ||||||||||||||| ||||||||||||||||    
T  3046830 aaaaaataaatattaattgcccaatacttctccgatacacgtatcgggacgtatc 3046884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 44718711 - 44718762
Alignment:
Q  230 cttcaaaaa-ataaatattaattgttcgatacttctccgatacgcgtatcgg 280  Q
    ||||||||| |||||||||||| | |||||||||||||||||||| ||||||    
T  44718711 cttcaaaaagataaatattaatcgatcgatacttctccgatacgcatatcgg 44718762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 3046756 - 3046810
Alignment:
Q  150 ggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacg 204  Q
    ||||||||||||||| | |||| ||||||||||||||||||  ||||| ||||||    
T  3046756 ggtgtcggagtataaattagctgtgtcggagtacaagttagctgtatcagacacg 3046810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 37799 - 38223
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||          
T  37799 taacattagagagaagagaaacagagtagaattcaatcagcggtaatggttagaagagaaaatagctattgctatgtggtgacgagaaacccta-ttttt 37897  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      |||||| |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||       
T  37898 ttaggttaaaagagacaatatgattttgatagcgctgccagacttgataagtgtcggagtataagtaagctgtgttggagtacaagttagtcgtatc--- 37994  T
Q  201 cacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcg 300  Q
         ||||||||||||||||       ||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  37995 -----cgacacgtatcggtcatttttttccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtattgggacgtatccgacacgtatcg 38089  T
Q  301 gtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagat 399  Q
    ||||||||||||        ||||||||||||||||||||| |||| |||||| ||||||||||| |||| |||||||||||||| |||||||||| |||    
T  38090 gtcattgtttttttaagaaataaatattaattgcccgatacttttctgatacccgtatcgggacgtatcggggcgtatcggtatcagatacgtgtcggat 38189  T
Q  400 tcgatacttcaccatttttggagtatcggggctt 433  Q
     |||||||||| ||||||||||||||||||||||    
T  38190 acgatacttcatcatttttggagtatcggggctt 38223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 14811605 - 14811174
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          
T  14811605 taacattagagagaagagaaatagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaatcctatttttt 14811506  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| ||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14811505 t-aggttagaagagacaatatgattttaatagtgctgccagacttaataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccga 14811407  T
Q  201 cacggcgacacgtatcggtcannnnnnn-ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
    ||||        |||||||||        ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||    
T  14811406 cacg--------tatcggtcattttttttccttcaaaaaataaatattaattgtccgatatttctccgatacacgtatcgggacgtatccgacacgtatc 14811315  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcaga 398  Q
    ||||||||||||||       ||||||||||||||||||||| ||||||||||  ||||||||||| |||| ||||||||||||||||||||||||| ||    
T  14811314 ggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacgcgtatcgggacgtatcggggcgtatcggtatcggatacgtgtcgga 14811215  T
Q  399 ttcgatacttcaccatttttggagtatcggggcttgagaga 439  Q
    | ||||||||||||||||||| ||| ||||||||| |||||    
T  14811214 tacgatacttcaccatttttgaagtgtcggggcttcagaga 14811174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 14314135 - 14314562
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaata-------gctattgctatgtggtgacgagaaaccct 93  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  14314135 taacattagagagaagagaaacaaagtagaattcaatcaccggtaatggttagaagagagaataactattggctattgctatgtggtgacgagaaaccct 14314234  T
Q  94 annnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcg 193  Q
    |        ||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||    
T  14314235 attttttt-aggttagaagagacaatatgattttgatagcgcagccagacttgataggtgttggagtataagtaagctgtgtcggagtgcaagttagtcg 14314333  T
Q  194 tatccgacacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgaca 293  Q
    |||||||||||        |||||||||       ||||||||||||||||||||||||  ||||||||||||||||||||||||          |||||    
T  14314334 tatccgacacg--------tatcggtcatttttttccttcaaaaaataaatattaattgcccgatacttctccgatacgcgtatc----------cgaca 14314415  T
Q  294 cgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatacttt-ccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgt 392  Q
    ||||||||||||||||||||       |||||||||||||||||||||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||    
T  14314416 cgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacgcgtatcgggacgtatcggggcgtatcggtatcggatacgt 14314515  T
Q  393 gtcagattcgatacttcaccatttttggagtatcggggcttgagaga 439  Q
    ||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  14314516 gtcggatacgatacttcaccatttttggagtatcggggctttagaga 14314562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 27709937 - 27709996
Alignment:
Q  373 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggct 432  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  27709937 cgtatcggtatcggatacgtgtcagacacgattcttcaccatttttggagtatcggggct 27709996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 29081213 - 29081152
Alignment:
Q  33 tcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 94  Q
    |||||| ||||||||||||||||||| ||||| ||||||||  ||||||||||| |||||||    
T  29081213 tcaatcggtggtaatggttagaagagggaataactattgctcggtggtgacgaggaacccta 29081152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 438
Target Start/End: Original strand, 32751109 - 32751174
Alignment:
Q  373 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    ||||||||||||||||||||||| |||   || ||||||||||||||||||||||| |||| ||||    
T  32751109 cgtatcggtatcggatacgtgtcggatataattcttcaccatttttggagtatcggagcttcagag 32751174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13043633 - 13043666
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  13043633 taacattagagagaagagaaacatagtagaattc 13043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 439
Target Start/End: Complemental strand, 30947881 - 30947455
Alignment:
Q  9 gagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggtta 108  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        || |||    
T  30947881 gagagaagagaaacatagtagaattcaatcggtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctattttttt-agatta 30947783  T
Q  109 gaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcga 208  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||  ||   |  |||    
T  30947782 gaagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagt--tagtcgtatc--cga 30947687  T
Q  209 cacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgt 308  Q
    |||||||| ||||       |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30947686 cacgtatcagtcatttttttccttcaaaaaataaatattaattgtctgatacttctccgatacgcgtatcgggacgtatccgacacgtatcagtcattgt 30947587  T
Q  309 ttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatact 407  Q
    |||||       ||||||||||||||||||||| ||| ||||||| ||||||| ||| |||| ||||||||||||||| ||||||||| ||| |||||||    
T  30947586 ttttcaaaaaaataaatattaattgcccgatactttttcgatacccgtatcggaacgtatcggggcgtatcggtatcgaatacgtgtcggatacgatact 30947487  T
Q  408 tcaccatttttggagtatcggggcttgagaga 439  Q
    |||||||||||| ||||||||||||| |||||    
T  30947486 tcaccatttttgtagtatcggggcttcagaga 30947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 19928002 - 19928419
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          
T  19928002 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccata-ttttt 19928100  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||  | |||||||||||||||||||| |||||||||| |||||   ||||||||||||| ||||||||||||||||||||||||        
T  19928101 ttaggttagaagag--actatgattttgatagcgctgccagacttgataagtgtcaaggtataagtaagctgtgtcggagtacaagttagtcgtat---- 19928194  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
         | ||||||||||||||        ||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  19928195 ----tcaacacgtatcggtcattttttttccttcaaaaaataaatattaactgtctgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 19928290  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatactttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagat 399  Q
    ||||||||||||||       ||||||||||||||          |||||||| ||||||||| | ||||  |||||||||||||||||||||||| |||    
T  19928291 ggtcattgtttttcaaaaaaataaatattaattgc----------ccgatacccgtatcgggatgtatcggagcgtatcggtatcggatacgtgtcggat 19928380  T
Q  400 tcgatacttcaccatttttggagtatcggggcttgagag 438  Q
     ||||||||||||||||||||||||||||||||| ||||    
T  19928381 acgatacttcaccatttttggagtatcggggctttagag 19928419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 25443927 - 25443577
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||           
T  25443927 taacattagagagaagagaaacagagtagaattcaatctgtggtaatggttagaaaagagaatagctattgatatgtggtgatgagaaaccct-tatttt 25443829  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||| ||||||||||||| | |||||       
T  25443828 ttaggttagaagaaacaatatgattttgatagcgctgccagacttgataggtgtcggaatataagtaagatgtgt-ggagtacaagttaattgtatc--- 25443733  T
Q  201 cacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcg 300  Q
         ||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  25443732 -----cgacacgtatcggtca-ttttttccttcaaaaaataaatattaattgtccgatacttctccgatacgcgtatcgggatgtatctgacacgtatcg 25443639  T
Q  301 gtcattgtttttc-nnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgg 360  Q
    ||||||||||| |        |||||||||||||| |||||| ||||||||||| |||||||    
T  25443638 gtcattgttttacaaaaaaaataaatattaattgctcgatacttttccgatacccgtatcgg 25443577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 120 - 438
Target Start/End: Original strand, 40819769 - 40820069
Alignment:
Q  120 atgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggt 219  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||        |||||||    
T  40819769 atgattttgatagcgctgccagacttgataagtgtcggagtataagtaagctgtgttggagtacaagttagtcgtatccgacacg--------tatcggt 40819860  T
Q  220 cannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnn 319  Q
    ||       | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  40819861 catttttttc-ttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaa 40819959  T
Q  320 ntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccattttt 418  Q
     |||||||||||| |||||||| ||||||||||| |||||||||          ||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  40819960 ataaatattaatttcccgatacttttccgatacccgtatcggga----------cgtatcggtatcgcatacgtgtcggatacgatacttcaccattttt 40820049  T
Q  419 ggagtatcggggcttgagag 438  Q
    ||||||||||||||| ||||    
T  40820050 ggagtatcggggctttagag 40820069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 145 - 438
Target Start/End: Original strand, 37245166 - 37245443
Alignment:
Q  145 tgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnnnn-ccttcaaaaaataaa 243  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||        |||||||||||||||    
T  37245166 tgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacg--------tatcggtcattttttttccttcaaaaaataaa 37245257  T
Q  244 tattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-t 342  Q
    ||||||||||  ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||       |||| |||||||||||||||| |    
T  37245258 tattaattgtctgatacttttccgatacgcgtatcgcgacgtatctgacacgtatcggtcattgtttttcaaaaaaataaacattaattgcccgatactt 37245357  T
Q  343 ttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    |||||||||| ||||| |||          |||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  37245358 ttccgatacccgtatcagga----------cgtatcggtatcagatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcagag 37245443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 236 - 438
Target Start/End: Original strand, 26279779 - 26279982
Alignment:
Q  236 aaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcc 335  Q
    |||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||    
T  26279779 aaaataaatattaacttcccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaattgcc 26279878  T
Q  336 cgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttg 434  Q
    |||||| |||||||||| |||||||||||| ||||  || |||||||||| |||||||||| ||| |||||||||||||||||| ||||||||||||||     
T  26279879 cgatacttttccgatacgtgtatcgggacgtatcggagcatatcggtatctgatacgtgtcggatacgatacttcaccatttttagagtatcggggcttc 26279978  T
Q  435 agag 438  Q
    ||||    
T  26279979 agag 26279982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40819679 - 40819768
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 90  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40819679 taacattagagagaagagaaacagagtagaattcaataagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 40819768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26279693 - 26279781
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26279693 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaa 26279781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 22293164 - 22293075
Alignment:
Q  5 attagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 94  Q
    ||||||||||||||||||| |||||||||  ||| ||||||||||||||||||| ||||| |||| | ||| ||||||||||||||||||    
T  22293164 attagagagaagagaaacatagtagaatttgatcggtggtaatggttagaagagggaataactatcgttatatggtgacgagaaacccta 22293075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 22205102 - 22205173
Alignment:
Q  23 agagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 94  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  22205102 agagtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta 22205173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 22229637 - 22229566
Alignment:
Q  23 agagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 94  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  22229637 agagtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta 22229566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 37243003 - 37243094
Alignment:
Q  57 agagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgata 149  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  37243003 agagaatagttattgctatgtggtgacgagaaaccctattttttt-aggttagaagagacaatatgattttgatagcgctgccagacttgata 37243094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 25443584 - 25443519
Alignment:
Q  373 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||| ||||    
T  25443584 cgtatcggtatcggatacgtgtcggatacgatacttcaccattttttgagtatcagggcttcagag 25443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 438
Target Start/End: Original strand, 22205404 - 22205469
Alignment:
Q  373 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    |||||||||||||||||||| || ||  |||| |||||||||||||||||||||||||||| ||||    
T  22205404 cgtatcggtatcggatacgtatcggacacgattcttcaccatttttggagtatcggggctttagag 22205469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 22229335 - 22229270
Alignment:
Q  373 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    |||||||||||||||||||| || ||  |||| |||||||||||||||||||||||||||| ||||    
T  22229335 cgtatcggtatcggatacgtatcggacacgattcttcaccatttttggagtatcggggctttagag 22229270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 45280781 - 45280729
Alignment:
Q  234 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgta 286  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  45280781 aaaaaataaatattaattgaccgatacttctccaatacgcgtatcgggacgta 45280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 45281075 - 45280984
Alignment:
Q  3 acattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 94  Q
    |||||||||  |||||||||| |||||||| ||||  ||| || |||||||||||| ||||| |||| ||| |||||||| |||||||||||    
T  45281075 acattagagcaaagagaaacatagtagaatacaattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaacccta 45280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 15043301 - 15043355
Alignment:
Q  234 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    |||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  15043301 aaaaaataaatattaattggccgatacttcaccgatacacgtatcgggacgtatc 15043355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 26279858 - 26279912
Alignment:
Q  234 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    |||||||||||||||||||  |||||||| ||||||||| |||||||||||||||    
T  26279858 aaaaaataaatattaattgcccgatacttttccgatacgtgtatcgggacgtatc 26279912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 36630446 - 36630392
Alignment:
Q  234 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  36630446 aaaaaataaatattaattgtcagatacttctccgatacacgtatcgggacatatc 36630392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 36630305 - 36630251
Alignment:
Q  234 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    ||||||||||||||||||| | |||||||||||||||| | ||||||||| ||||    
T  36630305 aaaaaataaatattaattgcttgatacttctccgatacacatatcgggacatatc 36630251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 22205352 - 22205409
Alignment:
Q  231 ttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    |||||||||  |||||||||||  |||||||| ||||||||||||||||| |||||||    
T  22205352 ttcaaaaaaataatattaattgcccgatacttttccgatacgcgtatcggaacgtatc 22205409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 22229387 - 22229330
Alignment:
Q  231 ttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    |||||||||  |||||||||||  |||||||| ||||||||||||||||| |||||||    
T  22229387 ttcaaaaaaataatattaattgcccgatacttttccgatacgcgtatcggaacgtatc 22229330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 15043269 - 15043356
Alignment:
Q  283 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatactt-tccgatacctgtatcgggacgcatcg 369  Q
    |||||||||||| ||||||||||| ||||||       ||||||||||||| |||||||||  |||||||  ||||||||||| ||||    
T  15043269 cgtatccgacacatatcggtcattttttttcaaaaaaataaatattaattggccgatacttcaccgatacacgtatcgggacgtatcg 15043356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 45280854 - 45280804
Alignment:
Q  154 tcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacg 204  Q
    ||||||||||||| |||  |||| |||||||||||||||||||| ||||||    
T  45280854 tcggagtataagttagccgtgtcagagtacaagttagtcgtatctgacacg 45280804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 4533799 - 4533370
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||          
T  4533799 taacattagagagaagagaaacagagtagaattcaataagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaaccctattattt 4533700  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  4533699 t-aggttagaagagataatatgattttgatagcgctgccaaacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatctga 4533601  T
Q  201 cacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcg 300  Q
    | ||        |||||||||       ||||||||||||||||| |||||||  |||||||||| |||||||||||||| ||||||||||||| |||||    
T  4533600 cgcg--------tatcggtcatttttttccttcaaaaaataaataataattgtctgatacttctc-gatacgcgtatcggaacgtatccgacacatatcg 4533510  T
Q  301 gtcattgtttttcnnnnnnntaaatattaattgcccgatacttt-ccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagat 399  Q
    |||||||||||||       |||||||||||||||||||||||| |||||||| ||||||| ||| ||||  ||||||||||||| |||||||||| |||    
T  4533509 gtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcggaacgtatcggagcgtatcggtatcagatacgtgtcggat 4533410  T
Q  400 tcgatacttcaccatttttggagtatcggggcttgagaga 439  Q
     ||||||||||||||||| | ||||||| ||||| |||||    
T  4533409 acgatacttcaccattttcgaagtatcgcggcttcagaga 4533370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 39580222 - 39579803
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||          
T  39580222 taacattagagagaagagaaacaaagtagaattcaatcagtggtaatggttggtagagagaatagctattgctatgtggtgacgagaaaccctatttttt 39580123  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  39580122 t-aggttagaagagacattatgattttgatagcgctgccagagttgataggtgtcggagtataagtaagctgtgccggagtacaagttagtcgtatccga 39580024  T
Q  201 cacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcg 300  Q
    ||||        |||||||||       | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |    
T  39580023 cacg--------tatcggtcatttttttctttcaaaaaataaatattaattgtccgatacttctccgatacgcatatcgggacgtatccgacacgtattg 39579932  T
Q  301 gtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagat 399  Q
    |||||||||||||       ||||||||||||||||||||| ||||||||||| |||||||||          |||||| ||||| ||||||||||||||    
T  39579931 gtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcggga----------cgtatcagtatcagatacgtgtcagat 39579842  T
Q  400 tcgatacttcaccatttttggagtatcggggcttgagag 438  Q
     ||||||||||||||||||||||||||||||||| ||||    
T  39579841 acgatacttcaccatttttggagtatcggggcttcagag 39579803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 959164 - 958813
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||          
T  959164 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaaccctatttttt 959065  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  959064 t-aggttagaagagacaatatgattttgatagcgctgccagacttgataggtgtcagagtataagtaagctgtgtcggagtacaagttagtcgtatccga 958966  T
Q  201 cacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcg 300  Q
    ||||        |||| ||||       ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  958965 cacg--------tatcagtcatttttttccttcaaaaaataaatattaaatgtttgatacttctccgatacgcgtatcgggacgtatccgacacgtatcg 958874  T
Q  301 gtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgg 360  Q
    |||||||||||||       ||||||||||||||||||||| ||||||||||| |||||||    
T  958873 gtcattgtttttcaaaaatataaatattaattgcccgatacttttccgatacccgtatcgg 958813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 39674506 - 39674088
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||          
T  39674506 taacattagagagaagagaaacggagtagaattcaatcagtggtaatg--tagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 39674409  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  39674408 t-aggttagaagagacaatatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccga 39674310  T
Q  201 cacggcgacacgtatcggtc-annnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
            ||||||||||||         ||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||    
T  39674309 --------cacgtatcggtctttttttttccttcaaaaaataaatattaactgtccgatacttttgcgatacgcgtatcgggacgtatccgacacgtatc 39674218  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcaga 398  Q
    |||||||||||||        ||||||||||||||||||||| |||| |||||| |||||||||          | ||||||||||| ||||||||| ||    
T  39674217 ggtcattgttttttaaaaaaataaatattaattgcccgatacttttctgatacccgtatcggga----------catatcggtatcgaatacgtgtcgga 39674128  T
Q  399 ttcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    | ||||||||||||||||||| ||||||||||||| ||||    
T  39674127 tacgatacttcaccatttttgaagtatcggggcttcagag 39674088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 25041668 - 25041311
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||          
T  25041668 taacattagagagaagagaaacagagtagaatttaatcagtggtaatggttaaaaaagagaatagctattgctatgtggtgacgagaaaccctatttttt 25041569  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25041568 ttaggttagaagagacaatatgattttgatagcgcagccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccga 25041469  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
            |||||||| ||||         |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  25041468 --------cacgtatcagtcattttatttacttcaaaaaataaatattaattgtccgatacttctccaatacgcgtattgggacgtatccgacacgtatc 25041377  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacg 364  Q
    ||||||||||||||       |||||||||||||| |||||| |||| |||||  |||||||||||    
T  25041376 ggtcattgtttttcaaaaaaataaatattaattgcgcgatacttttctgatactcgtatcgggacg 25041311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 53330438 - 53330860
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-nnnnn 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||          
T  53330438 taacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 53330537  T
Q  100 nnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccg 199  Q
         ||||||||||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||      
T  53330538 tttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagtacaagttagtcgtatc-- 53330635  T
Q  200 acacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtat 298  Q
          ||||||||||||| ||        ||||||||||||||||||||| ||  |||| ||| || ||||||||||||||||||||| ||||||||||    
T  53330636 ------cgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattcgacacgtat 53330729  T
Q  299 cggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcag 397  Q
     ||||||||||||||       ||||||||||||| ||||||| ||||||||||           || ||||||||||||||||||| ||||| |||| |    
T  53330730 tggtcattgtttttcaaaaaaataaatattaattgtccgatacttttccgatac----------gcgtatcgaggcgtatcggtatcagatacatgtcgg 53330819  T
Q  398 attcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    || ||||||||||||||||||||||||||||||||| ||||    
T  53330820 atacgatacttcaccatttttggagtatcggggcttcagag 53330860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 53334122 - 53334544
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-nnnnn 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||          
T  53334122 taacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 53334221  T
Q  100 nnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccg 199  Q
         ||||||||||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||      
T  53334222 tttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagtacaagttagtcgtatc-- 53334319  T
Q  200 acacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtat 298  Q
          ||||||||||||| ||        ||||||||||||||||||||| ||  |||| ||| || ||||||||||||||||||||| ||||||||||    
T  53334320 ------cgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattcgacacgtat 53334413  T
Q  299 cggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcag 397  Q
     ||||||||||||||       ||||||||||||| ||||||| ||||||||||           || ||||||||||||||||||| ||||| |||| |    
T  53334414 tggtcattgtttttcaaaaaaataaatattaattgtccgatacttttccgatac----------gcgtatcgaggcgtatcggtatcagatacatgtcgg 53334503  T
Q  398 attcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    || ||||||||||||||||||||||||||||||||| ||||    
T  53334504 atacgatacttcaccatttttggagtatcggggcttcagag 53334544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 53337799 - 53338221
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-nnnnn 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||          
T  53337799 taacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 53337898  T
Q  100 nnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccg 199  Q
         ||||||||||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||      
T  53337899 tttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagtacaagttagtcgtatc-- 53337996  T
Q  200 acacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtat 298  Q
          ||||||||||||| ||        ||||||||||||||||||||| ||  |||| ||| || ||||||||||||||||||||| ||||||||||    
T  53337997 ------cgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcgggacgtattcgacacgtat 53338090  T
Q  299 cggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcag 397  Q
     ||||||||||||||       ||||||||||||| ||||||| ||||||||||           || ||||||||||||||||||| ||||| |||| |    
T  53338091 tggtcattgtttttcaaaaaaataaatattaattgtccgatacttttccgatac----------gcgtatcgaggcgtatcggtatcagatacatgtcgg 53338180  T
Q  398 attcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    || ||||||||||||||||||||||||||||||||| ||||    
T  53338181 atacgatacttcaccatttttggagtatcggggcttcagag 53338221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 42864599 - 42864321
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  42864599 taacattagagagaagagaaacatagtagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 42864500  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      
T  42864499 t-aggttagaagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatcc-- 42864403  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtat 287  Q
          |||| ||||||||||        ||||||||||||||||||||| ||| |||||||||||||||||  || |||||||||||    
T  42864402 ------gacatgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacaagtgtcgggacgtat 42864321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 22976533 - 22976673
Alignment:
Q  4 cattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnna 103  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||             
T  22976533 cattagagagaaaagaaacatagtagaattcaatcggtggtaatggttagaagaggaaatagctatcgctatgtggtgacgagaaaccctattttttg-- 22976630  T
Q  104 ggttagaagagataatatgattttgatagcgctgcgagacttg 146  Q
    ||||| |||||| |||||| ||||||||||||||| |||||||    
T  22976631 ggttaaaagagacaatatgtttttgatagcgctgctagacttg 22976673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 321 - 438
Target Start/End: Complemental strand, 42864368 - 42864250
Alignment:
Q  321 taaatattaattgcccgatactt-tccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttg 419  Q
    |||||||||| || ||||||||| ||||||||  || |||||||| || | ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  42864368 taaatattaactgtccgatacttctccgatacaagtgtcgggacgtattggggcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttg 42864269  T
Q  420 gagtatcggggcttgagag 438  Q
    |||| ||||||||| ||||    
T  42864268 gagtttcggggcttcagag 42864250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 354 - 438
Target Start/End: Original strand, 53363115 - 53363199
Alignment:
Q  354 gtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    ||||||||||| |||| || ||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  53363115 gtatcgggacgtatcggggtgtatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53363199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 27391352 - 27391411
Alignment:
Q  374 gtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggctt 433  Q
    |||||||||||||||||||||||||  |||| |||||||||||||||||||| |||||||    
T  27391352 gtatcggtatcggatacgtgtcagacacgattcttcaccatttttggagtataggggctt 27391411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 25041361 - 25041308
Alignment:
Q  234 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtat 287  Q
    |||||||||||||||||||  |||||||| || ||||| |||||||||||||||    
T  25041361 aaaaaataaatattaattgcgcgatacttttctgatactcgtatcgggacgtat 25041308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 29359846 - 29359793
Alignment:
Q  150 ggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacac 203  Q
    ||||||||||||||||| | |  |||||||||||||||||| ||||||||||||    
T  29359846 ggtgtcggagtataagttacccgtgtcggagtacaagttagccgtatccgacac 29359793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21869183 - 21869148
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21869183 taacattagagagaagagaaacatagtagaattcaa 21869148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 24645647 - 24645699
Alignment:
Q  373 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtat 425  Q
    |||||| ||||||||||||||||  |  |||| ||||||||||||||||||||    
T  24645647 cgtatcagtatcggatacgtgtcgaacacgattcttcaccatttttggagtat 24645699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 41530477 - 41530533
Alignment:
Q  375 tatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggc 431  Q
    ||||||| ||||||||||||| ||  |||| |||||||||||||| |||||| ||||    
T  41530477 tatcggtgtcggatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 41530533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 21112417 - 21111998
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  21112417 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 21112318  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  21112317 t-aggttagaagagacaatatgattttgatagcgctgccagacttgataggtgtcagagtataagtaagttgtgtcggagtacaagttagtcgtatccga 21112219  T
Q  201 cacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcg 300  Q
    ||||        |||| ||||       ||||||||||||||||||||| |||           ||||||||||||||||||||||||||||||||||||    
T  21112218 cacg--------tatcagtcatttttttccttcaaaaaataaatattaactgt-----------ccgatacgcgtatcgggacgtatccgacacgtatcg 21112138  T
Q  301 gtcattgtttttcnnnnnnntaaatattaattgcccgatacttt-ccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagat 399  Q
    |||||||||||||       |||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||| |||| ||||||| || |||    
T  21112137 gtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcgggacatatcgaggcgtatcgatatccgatacgtatcggat 21112038  T
Q  400 tcgatacttcaccatttttggagtatcggggcttgagaga 439  Q
     ||||||||||||||||||||||||||||| ||| |||||    
T  21112037 acgatacttcaccatttttggagtatcgggactttagaga 21111998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 8862359 - 8861950
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          
T  8862359 taacattatagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccctatttttt 8862260  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  8862259 t-aggttagaagagacaatatgattttgatagcgctgctagacttgataggtgtcggagtataagtaagctgtgtcggagtataagttagtcgtatccga 8862161  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
            ||||||||| | |        ||||||||||||||||||||| | | |||||||||||||||||||||||||||           |||||||    
T  8862160 --------cacgtatcgattattttttttccttcaaaaaataaatattaactatccgatacttctccgatacgcgtatcggg-----------acgtatc 8862080  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgata-ctttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcaga 398  Q
    ||||||||||||||       ||||||||||||||||||||  ||||||||||| |||| ||          ||||||||||||||||||||||||| ||    
T  8862079 ggtcattgtttttcaaaaaaataaatattaattgcccgatatttttccgatacccgtattgg----------ggcgtatcggtatcggatacgtgtcgga 8861990  T
Q  399 ttcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    | ||||||||||||||||||||||||||||||||| ||||    
T  8861989 tacgatacttcaccatttttggagtatcggggcttcagag 8861950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 109 - 438
Target Start/End: Complemental strand, 11382737 - 11382414
Alignment:
Q  109 gaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcga 208  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  11382737 gaagagacaatatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacg---- 11382642  T
Q  209 cacgtatcggtcannnnnnn-ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 307  Q
        ||||| |||        ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11382641 ----tatcgctcattttttttccttcaaaaaataaatattaattgtccgatacttcttcgatacgcgtatcgggacgtatccgacacgtatcggtcattg 11382546  T
Q  308 tttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatac 406  Q
    ||||||       ||||||||||||| ||||||| |||| |||||| ||||||||| | |||| ||||||||| ||||||||||||||| ||| ||||||    
T  11382545 tttttcaaaaaaataaatattaattgtccgatacttttctgatacccgtatcgggatgtatcggggcgtatcgatatcggatacgtgtctgatacgatac 11382446  T
Q  407 ttcaccatttttggagtatcggggcttgagag 438  Q
    ||||||||||||||||||||||| ||| ||||    
T  11382445 ttcaccatttttggagtatcgggactttagag 11382414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 46397845 - 46398266
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||| || |||||||||||| || ||| ||||||||||||||||||||||          
T  46397845 taacattagagagaagagaaacag--tagaattcaatcggtggtaatgattggaagagagaataactgttgatatgtggtgacgagaaaccctatttttt 46397942  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||| |||   |||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  46397943 t-aggttagaaaagac--tatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagctgtgtgggagtacaagttagtcgtatccga 46398039  T
Q  201 cacggcgacacgtatcggtcannnnnnnc-cttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
    ||||        |||||||||         |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  46398040 cacg--------tatcggtcatttttttttcttcaaaaaataaatattaattgtccgatacttctccgatacgtgtatcgggacgtatccgacacgtatc 46398131  T
Q  300 ggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcaga 398  Q
    ||||||||||||||       |||||||||||||||||| || |||| |||||| ||||||| ||| ||||  ||||||||||||| |||||||||  ||    
T  46398132 ggtcattgtttttcaaaaaaataaatattaattgcccgacacttttctgatacccgtatcggaacgtatcggagcgtatcggtatcagatacgtgttgga 46398231  T
Q  399 ttcgatacttcaccatttttggagtatcggggctt 433  Q
    | ||||||| |||||||||||||||||||||||||    
T  46398232 tacgatactacaccatttttggagtatcggggctt 46398266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 33369092 - 33368975
Alignment:
Q  15 agagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |         |||||||||||    
T  33369092 agagaaacagagtagaattcaatcagtggtaatggttagaagagggaatagctatcgctatgtggtgacgagaaacccaattttttg--ggttagaagag 33368995  T
Q  115 ataatatgattttgatagcg 134  Q
    |||||||| |||||||||||    
T  33368994 ataatatgtttttgatagcg 33368975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 23206306 - 23206363
Alignment:
Q  230 cttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||    
T  23206306 cttcaaaaaataaatattaattgtt-gatacttctccaatacgtgtatcgggacatatc 23206363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 29096232 - 29096172
Alignment:
Q  373 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggctt 433  Q
    |||||| ||||||||||||||| |||  |||| ||||| |||||||| |||||||||||||    
T  29096232 cgtatcagtatcggatacgtgttagacacgattcttcatcatttttgaagtatcggggctt 29096172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 33368823 - 33368779
Alignment:
Q  234 aaaaaataaatattaattgttcgatacttctccgatacgcgtatc 278  Q
    |||||||||||||||||||   |||||||||||||||||||||||    
T  33368823 aaaaaataaatattaattgcctgatacttctccgatacgcgtatc 33368779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 29096273 - 29096227
Alignment:
Q  242 aatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    |||||||||||  ||||||||||||||||||| |||||| |||||||    
T  29096273 aatattaattggccgatacttctccgatacgcatatcggaacgtatc 29096227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 438
Target Start/End: Complemental strand, 36606480 - 36606086
Alignment:
Q  25 agtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgat 124  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||    
T  36606480 agtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctattttttt-aggttagaagagacaatatgat 36606382  T
Q  125 tttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannn 224  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||        ||||| |||||||       
T  36606381 tttgatagcgctgccagacttgataggtgtcagagtataagtaagctgtgtcggagtacaagttagtcgtatccga--------cacgtgtcggtca-tt 36606291  T
Q  225 nnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaa 324  Q
        |||| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||       ||||    
T  36606290 ttttccttaaaaaaataaatattaattgtccgatacttctccgacacgcatatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaa 36606191  T
Q  325 tattaattgcccgata-ctttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagt 423  Q
    |||||||| || ||||  ||||||||||| |||||||||          ||||||| ||||||||||||||  ||| ||||||||||||||||||||| |    
T  36606190 tattaatttcctgatatttttccgatacccgtatcggga----------cgtatcgatatcggatacgtgtaggatacgatacttcaccatttttggaat 36606101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 8871573 - 8871283
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  8871573 taacattagagagaagagaaacatagtagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-ttttt 8871475  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||       
T  8871474 ttaggttagaagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataactaagatgtgtcggagtacaagttagtcgtatc--- 8871378  T
Q  201 cacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatc 299  Q
         ||||||||||||||||        ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||    
T  8871377 -----cgacacgtatcggtcattttttttccttcaaaaaataaatattaattgtccgatacttctctgatacgcgtatcgggacgtgcccgacacgtatc 8871283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 13854441 - 13854644
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||          
T  13854441 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagataatagttattgctatgtggtgacgagaaaccctatttttt 13854540  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  13854541 ttaggttaggagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccga 13854640  T
Q  201 cacg 204  Q
    ||||    
T  13854641 cacg 13854644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 6665998 - 6665857
Alignment:
Q  4 cattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnna 103  Q
    ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||             
T  6665998 cattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttttg- 6665900  T
Q  104 ggttagaagagataatatgattttgatagcgctgcgagacttg 146  Q
    |||||||||||| |||||| ||||||||||||||| |||||||    
T  6665899 ggttagaagagacaatatgtttttgatagcgctgccagacttg 6665857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 283 - 438
Target Start/End: Complemental strand, 6665776 - 6665622
Alignment:
Q  283 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatactt-tccgatacctgtatcgggacgcatcgaggcgtatcggt 381  Q
    |||||||||||||||||||| ||| ||||||        ||||||||||||| |||||||| ||||||||  |||| |||||| |||| |||||||||||    
T  6665776 cgtatccgacacgtatcggtaattttttttcaaaaaa--aaatattaattgctcgatacttctccgatacgcgtattgggacgtatcggggcgtatcggt 6665679  T
Q  382 atcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    |||| ||||||||| ||  |||| |||||||||||| ||||||||||||||| ||||    
T  6665678 atcgaatacgtgtcggacacgatccttcaccattttcggagtatcggggcttcagag 6665622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 32659213 - 32659069
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||| || |||||||  |||||||||||||||   ||||||| |||||||  |||||||||| ||||||||||||||||||||||||          
T  32659213 taacattagagggaggagaaacttagtagaattcaatcataagtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaaccctatatttt 32659114  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttg 146  Q
       |||||||||||| |||||| ||||||||||| ||| |||||||    
T  32659113 gg-ggttagaagagacaatatgtttttgatagcgttgccagacttg 32659069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 6665745 - 6665692
Alignment:
Q  235 aaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 288  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  6665745 aaaaaaaaatattaattgctcgatacttctccgatacgcgtattgggacgtatc 6665692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 8871289 - 8871240
Alignment:
Q  389 acgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    |||| ||||||  |||||||||| ||||||||||||||||||||||||||    
T  8871289 acgtatcagatatgatacttcacaatttttggagtatcggggcttgagag 8871240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 54260454 - 54260130
Alignment:
Q  1 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          
T  54260454 taacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaaccta-ttttt 54260356  T
Q  101 nnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccga 200  Q
      ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||       
T  54260355 ttaggttagaagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatc--- 54260259  T
Q  201 cacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcg 300  Q
         ||||||||||||||||       ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  54260258 -----cgacacgtatcggtcatttttttccttcaaaaaataaatattaattg-----------tccgatacgcgtatcgggacgtatccgacacgtatcg 54260175  T
Q  301 gtcattgtttttc-nnnnnnntaaatattaattgcccgatacttt 344  Q
    |||||||||||||        ||||||||||||||||||||||||    
T  54260174 gtcattgtttttcaaaaaaaataaatattaattgcccgatacttt 54260130  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 563343 - 563415
Alignment:
Q  366 atcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 438  Q
    |||| ||||||||||||||||||| ||||||||| |||| |||| | ||||||||||||||||||||| ||||    
T  563343 atcggggcgtatcggtatcggatatgtgtcagatacgattcttcgcgatttttggagtatcggggctttagag 563415  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 26261100 - 26261054
Alignment:
Q  235 aaaaataaatattaattgttcgatacttctccgatacgcgtatcggg 281  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||    
T  26261100 aaaaataaatattaattgcccgatacttctccgatatgcgtatcggg 26261054  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 26261323 - 26261273
Alignment:
Q  40 gtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 90  Q
    ||||||||||||||||||| |||||||||| |||  |||||||||||||||    
T  26261323 gtggtaatggttagaagagggaatagctatagctcggtggtgacgagaaac 26261273  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 54260093 - 54260056
Alignment:
Q  401 cgatacttcaccatttttggagtatcggggcttgagag 438  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  54260093 cgatacttcaccatttttggagtatcggggcttcagag 54260056  T

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Target: scaffold0274 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 433
Target Start/End: Original strand, 14430 - 14497
Alignment:
Q  366 atcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggctt 433  Q
    |||| ||||||||||||| ||||||| |||||   |||| |||||||||||||||||||  |||||||    
T  14430 atcggggcgtatcggtattggatacgcgtcaggcacgattcttcaccatttttggagtagtggggctt 14497  T

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Target: scaffold0274; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 14409 - 14442
Alignment:
Q  255 cgatacttctccgatacgcgtatcgggacgtatc 288  Q
    ||||||||||||||||||||||||||| ||||||    
T  14409 cgatacttctccgatacgcgtatcggggcgtatc 14442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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