View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685_low_11 (Length: 294)

Name: NF4685_low_11
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685_low_11
NF4685_low_11
[»] chr4 (11 HSPs)
chr4 (1-276)||(5198959-5199232)
chr4 (1-147)||(4848600-4848746)
chr4 (138-262)||(4848462-4848585)
chr4 (38-163)||(49583152-49583276)
chr4 (49-151)||(4151350-4151451)
chr4 (38-104)||(16962264-16962329)
chr4 (38-104)||(21315579-21315644)
chr4 (115-163)||(29866081-29866129)
chr4 (61-99)||(35026899-35026937)
chr4 (38-104)||(46824650-46824715)
chr4 (95-163)||(15522606-15522673)
[»] chr1 (4 HSPs)
chr1 (38-163)||(26828501-26828624)
chr1 (92-163)||(32900347-32900418)
chr1 (83-157)||(35811946-35812019)
chr1 (44-89)||(16422502-16422547)
[»] chr6 (8 HSPs)
chr6 (38-102)||(2721835-2721899)
chr6 (38-109)||(6134225-6134296)
chr6 (38-102)||(2718762-2718826)
chr6 (86-162)||(5263491-5263567)
chr6 (45-104)||(3234576-3234631)
chr6 (50-163)||(2918177-2918290)
chr6 (64-107)||(26329301-26329344)
chr6 (54-139)||(5288447-5288532)
[»] chr3 (4 HSPs)
chr3 (70-141)||(44652669-44652740)
chr3 (65-120)||(21292518-21292573)
chr3 (46-116)||(50262815-50262883)
chr3 (38-88)||(32104208-32104258)
[»] chr8 (6 HSPs)
chr8 (41-121)||(7411339-7411418)
chr8 (38-104)||(3424307-3424372)
chr8 (39-103)||(18076468-18076532)
chr8 (38-153)||(6196608-6196723)
chr8 (38-104)||(27054433-27054498)
chr8 (46-116)||(773871-773939)
[»] chr2 (6 HSPs)
chr2 (38-163)||(34656742-34656865)
chr2 (40-131)||(44705128-44705219)
chr2 (46-104)||(42237581-42237639)
chr2 (46-163)||(22588154-22588263)
chr2 (39-91)||(12352529-12352581)
chr2 (38-104)||(11445477-11445542)
[»] chr7 (7 HSPs)
chr7 (43-155)||(22350456-22350575)
chr7 (38-104)||(6218219-6218284)
chr7 (87-124)||(24118342-24118379)
chr7 (38-127)||(2301291-2301380)
chr7 (50-103)||(8560286-8560339)
chr7 (49-120)||(39048687-39048752)
chr7 (41-86)||(24118399-24118444)
[»] chr5 (11 HSPs)
chr5 (40-131)||(23325348-23325435)
chr5 (38-107)||(37247603-37247671)
chr5 (87-155)||(6329147-6329215)
chr5 (87-163)||(21256796-21256872)
chr5 (64-131)||(31898076-31898141)
chr5 (54-128)||(28342214-28342293)
chr5 (49-95)||(21253364-21253410)
chr5 (46-98)||(27582378-27582430)
chr5 (62-96)||(14434273-14434307)
chr5 (1-51)||(15027080-15027132)
chr5 (1-50)||(34272243-34272294)
[»] scaffold0526 (1 HSPs)
scaffold0526 (38-101)||(3335-3398)
[»] scaffold0472 (1 HSPs)
scaffold0472 (46-78)||(11824-11856)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 5198959 - 5199232
Alignment:
Q  1 aattatgttatgccaagtgtattttctcatgttatttttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataac 100  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5198959 aattatgttatgccgagtgtattttctcatgttattttcaatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataac 5199058  T
Q  101 ttaatttctcattgtttcttcataatttcattactataattcttttcataattttgtaatgaannnnnnnncttatataaacaaaattaaccactaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||    
T  5199059 ttaatttctcattgtttcttcataatttcattactataattcttttcataattttgtaatgaa--ttttttcttatataaacaaaattaacctctaataa 5199156  T
Q  201 attaggttgtaatgttttagaagagacaagaccacaaaaattaaatgagacaataagtgtatgttccctaccgttc 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5199157 attaggttgtaatgttttagaagagacaagaccacaaaaattaaatgagacaataaatgtatgttccctaccgttc 5199232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 4848746 - 4848600
Alignment:
Q  1 aattatgttatgccaagtgtattttctcatgttatttttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataac 100  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4848746 aattatgttatgccaaatgtattttctcatgttattttcaatcatagcattgcacaaatattattaaaattatttatactatcatataatgtataataac 4848647  T
Q  101 ttaatttctcattgtttcttcataatttcattactataattcttttc 147  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||    
T  4848646 ttaatttctcattgtttcttcataatttcataacaataattcttttc 4848600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 4848585 - 4848462
Alignment:
Q  138 aattcttttcataattttgtaatgaannnnnnnncttatataaacaaaattaaccactaataaattaggttgtaatgttttagaagagacaagaccacaa 237  Q
    |||||||||||||||||||||||||         ||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||| | |||||    
T  4848585 aattcttttcataattttgtaatga-ctttttttcttatataaaccaaatcaaccactaataaattaggttttaacgttttagaagagacaaaaacacaa 4848487  T
Q  238 aaattaaatgagacaataagtgtat 262  Q
    |||| |||||||||||||| |||||    
T  4848486 aaatcaaatgagacaataaatgtat 4848462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 49583152 - 49583276
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactat 137  Q
    ||||||| ||||||||| || | |||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||| |||||||| || | |    
T  49583152 ttaatcacaacattgcataagtcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttca-tagtgt 49583250  T
Q  138 aattcttttcataattttgtaatgaa 163  Q
    |||| |||||||||||| ||||||||    
T  49583251 aattattttcataatttagtaatgaa 49583276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 4151451 - 4151350
Alignment:
Q  49 attgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataattcttttca 148  Q
    |||||| |||| ||||||||||||||| ||| | |||||||||||||||||   |||||||| |||||||||||||||||||| ||| ||||| ||||||    
T  4151451 attgcataaatcttattaaaattatttgtac-accatataatgtataataatcaaatttctcgttgtttcttcataatttcataactctaattattttca 4151353  T
Q  149 taa 151  Q
    |||    
T  4151352 taa 4151350  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 16962329 - 16962264
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    |||||||  ||| |||||||||||||||||| | |||||| |||||||||||||||||| |||||||    
T  16962329 ttaatcacgacaatgcacaaatattattaaa-tcatttattctatcatataatgtataaaaacttaa 16962264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 21315579 - 21315644
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    ||||||| |||| ||||||||||||||| || | |||||| |||||||||| |||||||||||||||    
T  21315579 ttaatcacaacaatgcacaaatattatttaa-tcatttattctatcatatagtgtataataacttaa 21315644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 29866129 - 29866081
Alignment:
Q  115 tttcttcataatttcattactataattcttttcataattttgtaatgaa 163  Q
    |||||||||||||||||  || |||||||||||||||||||| ||||||    
T  29866129 tttcttcataatttcatacctgtaattcttttcataattttgcaatgaa 29866081  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 35026899 - 35026937
Alignment:
Q  61 ttattaaaattatttatactatcatataatgtataataa 99  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  35026899 ttattaaaattatttatattatcatttaatgtataataa 35026937  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 46824650 - 46824715
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    ||||||| |||| |||||||||||||||  ||| |||||| |||||||||| ||||||| |||||||    
T  46824650 ttaatcacaacaatgcacaaatattatt-taatcatttattctatcatatagtgtataagaacttaa 46824715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 15522606 - 15522673
Alignment:
Q  95 aataacttaatttctcattgtttcttcataatttcattactataattcttttcataattttgtaatgaa 163  Q
    ||||||||||||||| ||||||| |||||||||| | || | ||||| ||||||| ||| |||||||||    
T  15522606 aataacttaatttcttattgtttattcataatttta-taatgtaattattttcattattatgtaatgaa 15522673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 26828624 - 26828501
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactat 137  Q
    ||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||  || |||||||||||||||||||| ||||||| || || |||||    
T  26828624 ttaatcacaacattgcacaaattttattaaacttatttatactaacatataatgtgaaaaaacttaatttctcattgttttttcataagttaataactat 26828525  T
Q  138 aattcttttcataattttgtaatgaa 163  Q
    || |||||  ||||||||||||||||    
T  26828524 aactcttt--ataattttgtaatgaa 26828501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 32900418 - 32900347
Alignment:
Q  92 tataataacttaatttctcattgtttcttcataatttcattactataattcttttcataattttgtaatgaa 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| |||||||    
T  32900418 tataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaa 32900347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 35812019 - 35811946
Alignment:
Q  83 catataatgtataataacttaatttctcattgtttcttcataatttcattactataattcttttcataattttgt 157  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| || || | |||||||||  ||||||||||    
T  35812019 catataatgtataataacttaatttctcactgtttcttcttaattcca-taatgtaattctttcaataattttgt 35811946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 16422547 - 16422502
Alignment:
Q  44 ataacattgcacaaatattattaaaattatttatactatcatataa 89  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||    
T  16422547 ataatattgcacgaatcttattaaaattatttatactatcatataa 16422502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 2721899 - 2721835
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataactt 102  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataataactt 2721835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 6134225 - 6134296
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttct 109  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  6134225 ttaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttct 6134296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 2718826 - 2718762
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataactt 102  Q
    ||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2718826 ttaatcacaacctttcacaaatattattaaaattatttatattatcatataatgtataataactt 2718762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 5263567 - 5263491
Alignment:
Q  86 ataatgtataataacttaatttctcattgtttcttcataatttcattactataattcttttcataattttgtaatga 162  Q
    |||||||||| ||||||||||| |||||||||||| |||| ||||| ||||||  ||||||||||||||||||||||    
T  5263567 ataatgtatactaacttaatttttcattgtttcttaataagttcataactatatctcttttcataattttgtaatga 5263491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 3234576 - 3234631
Alignment:
Q  45 taacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    |||||||||| ||||||||||||||||||    |||||||||||||||||||||||||||    
T  3234576 taacattgcataaatattattaaaattat----actatcatataatgtataataacttaa 3234631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 2918177 - 2918290
Alignment:
Q  50 ttgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataattcttttcat 149  Q
    |||||||||| ||| |||| ||  ||| ||||| ||| |||||||||||||||||| ||  ||||||| |||||||| |||  | |  ||||||| ||||    
T  2918177 ttgcacaaatcttaataaacttggttacactattatacaatgtataataacttaatatcgtattgttttttcataatgtcacaagtgaaattcttctcat 2918276  T
Q  150 aattttgtaatgaa 163  Q
    ||||||||||||||    
T  2918277 aattttgtaatgaa 2918290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 26329344 - 26329301
Alignment:
Q  64 ttaaaattatttatactatcatataatgtataataacttaattt 107  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  26329344 ttaaaattatttatactatcatttaatgtattataacttaattt 26329301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 5288532 - 5288447
Alignment:
Q  54 acaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataa 139  Q
    |||||| ||||| || ||||||||||  |||| ||||  ||| ||||||||||| ||| |||||||| |||| ||||| |||||||    
T  5288532 acaaattttattcaacttatttataccgtcatgtaattgatactaacttaatttttcactgtttcttaataagttcataactataa 5288447  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 44652669 - 44652740
Alignment:
Q  70 ttatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataatt 141  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||    
T  44652669 ttatttatactatcatgtaatgtataataatttaatttctaattgtttcttcatgatttcataactataatt 44652740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 21292518 - 21292573
Alignment:
Q  65 taaaattatttatactatcatataatgtataataacttaatttctcattgtttctt 120  Q
    |||||||||||||||||||  ||||||||||| |||||| |||| |||||||||||    
T  21292518 taaaattatttatactatctcataatgtataaaaacttattttcacattgtttctt 21292573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 50262815 - 50262883
Alignment:
Q  46 aacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtt 116  Q
    |||||||| ||||| |||||||| || |||||||||||  ||||||| ||||||| |||||||||||||||    
T  50262815 aacattgcccaaatcttattaaacttttttatactatc--ataatgtgtaataacataatttctcattgtt 50262883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 32104208 - 32104258
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatata 88  Q
    ||||||| ||||| |||||||  ||||||||||||||||| ||||||||||    
T  32104208 ttaatcacaacatggcacaaacgttattaaaattatttatgctatcatata 32104258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 7411339 - 7411418
Alignment:
Q  41 atcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttc 121  Q
    |||| |||||| ||||||| |||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttct-attgtttcttc 7411418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 3424307 - 3424372
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    ||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  3424307 ttaatcacaacaatgcacaa-tattataaaaattatttatactatcatataatgtataataacttaa 3424372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 18076468 - 18076532
Alignment:
Q  39 taatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataactta 103  Q
    |||||||||| | |||||||| ||||||||||||||| | || ||||||||||||||||||||||    
T  18076468 taatcataacgtagcacaaatcttattaaaattatttgtgctgtcatataatgtataataactta 18076532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 6196723 - 6196608
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactat 137  Q
    ||||||| |||| ||||||||| |||| |||| ||||| | ||||| |||||||| |||| ||| ||||||| ||||||||||| ||| ||||| | | |    
T  6196723 ttaatcacaacaatgcacaaatcttatcaaaagtatttgtgctatcctataatgtttaatgactcaatttcttattgtttcttcgtaagttcataattgt 6196624  T
Q  138 aattcttttcataatt 153  Q
     |||| ||||||||||    
T  6196623 cattcctttcataatt 6196608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 27054433 - 27054498
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    ||||||| |||| | |||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  27054433 ttaatcacaacaatccacaaatattattaaa-tcatttattctatcatataatgtataataacttaa 27054498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 773939 - 773871
Alignment:
Q  46 aacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtt 116  Q
    |||||||| ||| | |||||||| ||||||||||||||  ||||||| ||||||| |||||||||||||||    
T  773939 aacattgcccaattcttattaaacttatttatactatc--ataatgtgtaataacgtaatttctcattgtt 773871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 34656742 - 34656865
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactat 137  Q
    ||||||| || |||| ||| ||||||||||  ||||||||| ||||||||| ||||||||||||| |||| | | ||||||||||||| ||||| ||  |    
T  34656742 ttaatcaaaatattgaacagatattattaagtttatttataatatcatatactgtataataacttcattt-tgagtgtttcttcataagttcataacagt 34656840  T
Q  138 aattcttttcataattttgtaatgaa 163  Q
    ||||| ||||||||| ||||||||||    
T  34656841 aattc-tttcataatcttgtaatgaa 34656865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 44705219 - 44705128
Alignment:
Q  40 aatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcat 131  Q
    ||||| |||||||||||||| ||||||||  | |||| |||||||||| || ||||||||| || |||||  ||||||||||||||||||||    
T  44705219 aatcacaacattgcacaaatcttattaaacatgtttacactatcatatgatttataataacctactttctttttgtttcttcataatttcat 44705128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 42237581 - 42237639
Alignment:
Q  46 aacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    |||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||    
T  42237581 aacattgcacaaatcttattaaaattatttatattatcaaacaatgtataataacttaa 42237639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 22588263 - 22588154
Alignment:
Q  46 aacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataattcttt 145  Q
    |||||| ||||||| ||||| || ||||||||||| ||||||||| |        ||||||| | |||||||||| |||| ||||| ||||||| |||||    
T  22588263 aacatttcacaaatcttattcaacttatttatactgtcatataattt--------ttaatttttaattgtttcttaataagttcataactataactcttt 22588172  T
Q  146 tcataattttgtaatgaa 163  Q
    ||||||||||||||||||    
T  22588171 tcataattttgtaatgaa 22588154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 12352529 - 12352581
Alignment:
Q  39 taatcataacattgcacaaatattattaaaattatttatactatcatataatg 91  Q
    |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||    
T  12352529 taatcacaacattgcacaaatcttattaaacttatttacactatcatataatg 12352581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 11445542 - 11445477
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    ||||||| |||| | ||| |||||||||||| | |||||| ||||||||||||||||||||||||||    
T  11445542 ttaatcacaacaatccacgaatattattaaa-tcatttattctatcatataatgtataataacttaa 11445477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 22350456 - 22350575
Alignment:
Q  43 cataacattgcacaaatattattaaaattatttatactatcatat-------aatgtataataacttaatttctcattgtttcttcataatttcattact 135  Q
    ||||||||||||||||| |||||||||||||||   |||||||||       |||||||||||||||||  ||||||| | ||||  ||||||||| ||     
T  22350456 cataacattgcacaaattttattaaaattatttgccctatcatatttgtactaatgtataataacttaaaatctcattttgtctttgtaatttcataacc 22350555  T
Q  136 ataattcttttcataatttt 155  Q
     |||||||||||||||||||    
T  22350556 gtaattcttttcataatttt 22350575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 6218284 - 6218219
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaa 104  Q
    ||||||| |||| |||||||||||||||||| | |||||| |||||||||| |||||||||||||||    
T  6218284 ttaatcacaacaatgcacaaatattattaaa-tcatttattctatcatatagtgtataataacttaa 6218219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 24118379 - 24118342
Alignment:
Q  87 taatgtataataacttaatttctcattgtttcttcata 124  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24118379 taatgtataataacttaatttctcattgtttcttcata 24118342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 2301380 - 2301291
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatt 127  Q
    |||||| |||||| |||||||| || ||||||| |||||||||||   ||||| |   |||||||||||||||||||  |||||||||||    
T  2301380 ttaatcgtaacatagcacaaatcttgttaaaatcatttatactatttgataatatgatataacttaatttctcattgactcttcataatt 2301291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 8560286 - 8560339
Alignment:
Q  50 ttgcacaaatattattaaaattatttatactatcatataatgtataataactta 103  Q
    ||||||| || |||||||||||||||||| || ||||||| |||||||||||||    
T  8560286 ttgcacatatcttattaaaattatttatattaacatataaagtataataactta 8560339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 39048687 - 39048752
Alignment:
Q  49 attgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttctt 120  Q
    |||||| |||| |||||||| ||||||||| |||||||||||||||     |||||||||||||||||||||    
T  39048687 attgcataaatcttattaaa-ttatttatattatcatataatgtat-----cttaatttctcattgtttctt 39048752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 24118444 - 24118399
Alignment:
Q  41 atcataacattgcacaaatattattaaaattatttatactatcata 86  Q
    |||| ||||||| |||||| |||||||||||||| |||||||||||    
T  24118444 atcacaacattgtacaaatcttattaaaattattcatactatcata 24118399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 23325348 - 23325435
Alignment:
Q  40 aatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcat 131  Q
    ||||| || |||||||| || |||||||||||||||| ||||||||||| |   |||||||||||||| | |||||||||||||||||||||    
T  23325348 aatcacaaaattgcacatatcttattaaaattatttacactatcatatagt---taataacttaattt-ttattgtttcttcataatttcat 23325435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 37247671 - 37247603
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataacttaattt 107  Q
    ||||||| |||| |||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||    
T  37247671 ttaatcacaacaatgcacaaatattattaaa-tcatttattctatcatatagtgtataataacttaattt 37247603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 6329215 - 6329147
Alignment:
Q  87 taatgtataataacttaatttctcattgtttcttcataatttcattactataattcttttcataatttt 155  Q
    ||||||||||||||||||| ||||| | |||||| |||||||||| ||  |||||||||||||||||||    
T  6329215 taatgtataataacttaatatctcaatctttctttataatttcataacggtaattcttttcataatttt 6329147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 21256796 - 21256872
Alignment:
Q  87 taatgtataataacttaatttctcattgtttcttcataatttcattactataattcttttcataattttgtaatgaa 163  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| | | | || || | ||||||||||| |||||||    
T  21256796 taatgtataataacttaatttcttattgtttcttcatgatttcttaagtgtagttttgttcataattttctaatgaa 21256872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 31898141 - 31898076
Alignment:
Q  64 ttaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcat 131  Q
    |||||||| ||||||||||||||  |||| ||||| |||||||||||| ||||| |||||||||||||    
T  31898141 ttaaaattctttatactatcata--atgtttaatagcttaatttctcactgtttgttcataatttcat 31898076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 28342293 - 28342214
Alignment:
Q  54 acaaatattattaaaattatttatactatcatataat-----gtataataacttaatttctcattgtttcttcataattt 128  Q
    |||||| |||||||||||||||||||| ||||||| |     ||||||||| ||||||| || |||||||||||||||||    
T  28342293 acaaattttattaaaattatttatactgtcatatagtatagtgtataataatttaatttttcgttgtttcttcataattt 28342214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 21253364 - 21253410
Alignment:
Q  49 attgcacaaatattattaaaattatttatactatcatataatgtata 95  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  21253364 attgctcaaattttattaaacttatttatactatcatataatgtata 21253410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 27582378 - 27582430
Alignment:
Q  46 aacattgcacaaatattattaaaattatttatactatcatataatgtataata 98  Q
    |||||||  ||||||||||| ||||||||||| ||||||||||| ||||||||    
T  27582378 aacattgtccaaatattattcaaattatttattctatcatataaggtataata 27582430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 14434273 - 14434307
Alignment:
Q  62 tattaaaattatttatactatcatataatgtataa 96  Q
    ||||||||||||||||| |||||||||||||||||    
T  14434273 tattaaaattatttatattatcatataatgtataa 14434307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15027080 - 15027132
Alignment:
Q  1 aattatgttatgccaagtgtattttctca--tgttatttttaatcataacatt 51  Q
    |||||||||||||||| ||||||||||||  |||||||||  |||||||||||    
T  15027080 aattatgttatgccaaatgtattttctcatgtgttattttggatcataacatt 15027132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34272294 - 34272243
Alignment:
Q  1 aattatgttatgccaagtgtattttctc--atgttatttttaatcataacat 50  Q
    |||||||||||||||| |||||||||||  ||| |||||| |||||||||||    
T  34272294 aattatgttatgccaaatgtattttctcatatgctattttgaatcataacat 34272243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 3398 - 3335
Alignment:
Q  38 ttaatcataacattgcacaaatattattaaaattatttatactatcatataatgtataataact 101  Q
    ||||||| ||||||||||||||  || | |||||||||||||||||| |||||| |||||||||    
T  3398 ttaatcacaacattgcacaaattataattaaattatttatactatcagataatgcataataact 3335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 11824 - 11856
Alignment:
Q  46 aacattgcacaaatattattaaaattatttata 78  Q
    |||||||||||||| ||||||||||||||||||    
T  11824 aacattgcacaaatcttattaaaattatttata 11856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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