View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685_low_13 (Length: 278)

Name: NF4685_low_13
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685_low_13
NF4685_low_13
[»] scaffold0003 (2 HSPs)
scaffold0003 (104-259)||(34641-34796)
scaffold0003 (104-259)||(41308-41466)
[»] chr2 (2 HSPs)
chr2 (104-259)||(14455449-14455603)
chr2 (2-84)||(923592-923670)
[»] chr6 (1 HSPs)
chr6 (104-259)||(27445892-27446050)
[»] chr3 (1 HSPs)
chr3 (9-150)||(46833222-46833357)
[»] chr8 (1 HSPs)
chr8 (2-92)||(27540949-27541035)


Alignment Details
Target: scaffold0003 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 104 - 259
Target Start/End: Original strand, 34641 - 34796
Alignment:
Q  104 tatgaccacatataggcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga 203  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  34641 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata 34740  T
Q  204 attatatatttttagagtattccttttgtgtactatataatactatagcagcactt 259  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34741 attatatatttttagagtattccttctgtgtactatataatactatagcagcactt 34796  T

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Target: scaffold0003; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 104 - 259
Target Start/End: Original strand, 41308 - 41466
Alignment:
Q  104 tatgaccacatataggcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc 200  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  41308 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc 41407  T
Q  201 agaattatatatttttagagtattccttttgtgtactatataatactatagcagcactt 259  Q
    | |||||||| ||||||||||||||||| | ||||||||||||||||||| || |||||    
T  41408 ataattatatttttttagagtattccttctttgtactatataatactatatcaacactt 41466  T

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Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 104 - 259
Target Start/End: Original strand, 14455449 - 14455603
Alignment:
Q  104 tatgaccacatataggcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga 203  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  14455449 tatgaccacatatagatttcatttataaactttgacagaaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata 14455548  T
Q  204 attatatatttttagagtattccttttgtgtactatataatactatagcagcactt 259  Q
    ||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  14455549 attttatatttttagagta-tccttctttgtactatataatactatagcagcactt 14455603  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 923670 - 923592
Alignment:
Q  2 acaccatttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacactttaaattaatagttattgaaacata 84  Q
    ||||||||||||||||  || ||||||| |||||||||||||||||||||||||||||||||   |||||| |||||||||||    
T  923670 acaccatttttcaatccaaactcttaaa-gaagaaaaacatatgattagagacacactttaa---aatagtgattgaaacata 923592  T

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Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 104 - 259
Target Start/End: Complemental strand, 27446050 - 27445892
Alignment:
Q  104 tatgaccacatataggcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc 200  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27446050 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc 27445951  T
Q  201 agaattatatatttttagagtattccttttgtgtactatataatactatagcagcactt 259  Q
    | |||||||| ||||||||||||||||| | ||||||||||||||||||| || |||||    
T  27445950 ataattatatttttttagagtattccttctttgtactatataatactatatcaacactt 27445892  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 46833222 - 46833357
Alignment:
Q  9 ttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattgatacattagttttatga 108  Q
    |||||||||| || ||||||| ||||||||||| ||||||||||||||  |||||| ||||    ||||||||||||| |||||||||||||||||||||    
T  46833222 ttttcaatcgaaactcttaaa-gaagaaaaacacatgattagagacac--tttaaaataatg---attgaaacatagttattgatacattagttttatga 46833315  T
Q  109 ccacatataggcttcatttataaactttgacagcaaagcatg 150  Q
    |||||||||||||||||||||||||||| |||| ||| ||||    
T  46833316 ccacatataggcttcatttataaacttttacagaaaaacatg 46833357  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 27540949 - 27541035
Alignment:
Q  2 acaccatttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattga 92  Q
    |||| |||||||||||  || ||||||| ||||||||||| ||||||| ||||| |||||||||   |||| |||||||||||||||||||    
T  27540949 acactatttttcaatcaaaattcttaaa-gaagaaaaacacatgattaaagacatactttaaat---tagtgattgaaacatagtaattga 27541035  T

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