View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4685_low_16 (Length: 251)

Name: NF4685_low_16
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4685_low_16
NF4685_low_16
[»] chr3 (26 HSPs)
chr3 (1-205)||(24496617-24496821)
chr3 (112-234)||(25464423-25464546)
chr3 (134-240)||(18166520-18166626)
chr3 (112-219)||(19377004-19377112)
chr3 (134-240)||(19394513-19394619)
chr3 (122-240)||(17726054-17726173)
chr3 (122-240)||(19027283-19027402)
chr3 (134-240)||(18117320-18117426)
chr3 (111-240)||(19382257-19382387)
chr3 (122-239)||(19456661-19456779)
chr3 (122-226)||(18872395-18872500)
chr3 (134-240)||(18148182-18148288)
chr3 (134-232)||(19352764-19352862)
chr3 (134-240)||(19426054-19426160)
chr3 (134-240)||(19438310-19438416)
chr3 (71-218)||(16678593-16678750)
chr3 (134-240)||(19335376-19335482)
chr3 (48-218)||(19465738-19465918)
chr3 (22-199)||(24493190-24493375)
chr3 (112-218)||(17951209-17951316)
chr3 (122-232)||(18109802-18109913)
chr3 (122-240)||(19355079-19355198)
chr3 (134-240)||(17943318-17943424)
chr3 (134-232)||(18017394-18017492)
chr3 (134-240)||(19401090-19401196)
chr3 (134-240)||(19462544-19462650)
[»] chr4 (2 HSPs)
chr4 (73-238)||(2709032-2709207)
chr4 (37-240)||(15536897-15537110)
[»] chr8 (1 HSPs)
chr8 (45-240)||(8460930-8461135)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24496617 - 24496821
Alignment:
Q  1 ttcagaagcaggaactcactttctgtttggaactacccttaaccagcaggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacataga 100  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24496617 ttcagaagcaggaactcactttctctttggaactaaccttaaccagcaggagctcaattttagtgaaaattatttaaatttaccatcaaagttacataga 24496716  T
Q  101 gcttgtcatcgataaactgatagtatgtatgccccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  24496717 gcttgtcatcgataaactgatagtatgtatgccccatttcctaatacgaaacaaaggaccacagatcaaccagaaacctattccaaatccaactcccatg 24496816  T
Q  201 cctag 205  Q
    |||||    
T  24496817 cctag 24496821  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 25464546 - 25464423
Alignment:
Q  112 ataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtaca 210  Q
    |||||| || |||||| ||||| |||||||||||||  |||||||| | ||||||||  ||||||||||||| ||||||||||||||| |||||| ||||    
T  25464546 ataaaccgaaagtatgcatgcctccatttcctaataaaaaacaaagaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagataca 25464447  T
Q  211 atgattctcatatagagtcatcgt 234  Q
    ||||||||  ||||||||||||||    
T  25464446 atgattcttttatagagtcatcgt 25464423  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 18166626 - 18166520
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| |||||| ||||||||| | ||||||||  ||||||||||| | ||||||||||||||||||||||||||||  |||||| ||||||||||||     
T  18166626 ccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgcctaggtacaaccattctcttatagagtcatca 18166527  T
Q  234 tcttcat 240  Q
    |||||||    
T  18166526 tcttcat 18166520  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 19377112 - 19377004
Alignment:
Q  112 ataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtaca 210  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||||||| | | ||||||  ||||||||||| | |||||||||||||||||||||| ||||    
T  19377112 ataaactgaaagtatgcatgcctccatttcctaataagaaacaaagaaccgcaaatcccccagaaacctactgcaaatccaactcccatgcctagataca 19377013  T
Q  211 atgattctc 219  Q
    |||||||||    
T  19377012 atgattctc 19377004  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19394619 - 19394513
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    ||||||||||||| ||||||||| | ||||||||  ||||||||||| | |||||||||||||||| ||||| ||||||||||||  ||||||||| ||     
T  19394619 ccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttca 19394520  T
Q  234 tcttcat 240  Q
    |||||||    
T  19394519 tcttcat 19394513  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 17726054 - 17726173
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| |||||| |||||| ||||||||| | ||||||||  ||||||||||| | |||||||||||||||| ||||| ||||||||||||      
T  17726054 agtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttt 17726153  T
Q  221 tatagagtcatcgtcttcat 240  Q
     ||||||||||| |||||||    
T  17726154 gatagagtcatcatcttcat 17726173  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 19027283 - 19027402
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| |||||| |||||| ||||||||| | ||||||||  ||||||||||| | |||||||||||||||| ||||| ||||||||||||      
T  19027283 agtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttt 19027382  T
Q  221 tatagagtcatcgtcttcat 240  Q
     ||||||||||| |||||||    
T  19027383 gatagagtcatcatcttcat 19027402  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 18117426 - 18117320
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    ||||||||||||| |||||| || | ||||||||  ||||||||||| | ||||||| |||||||||||||| |||||||| |||| |||||| |||||     
T  18117426 ccatttcctaataagaaacatagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctagatacaatgactctcttatagattcatca 18117327  T
Q  234 tcttcat 240  Q
    |||||||    
T  18117326 tcttcat 18117320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 19382387 - 19382257
Alignment:
Q  111 gataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtac 209  Q
    ||||||| || |||||| ||||| ||||||||||||| |||| |||| | ||||||||  ||| ||||||| |||||||||||||||||||||||| |||    
T  19382387 gataaaccgaaagtatgcatgcctccatttcctaataagaaataaagaaccacaaatcccccaaaaacctactccaaatccaactcccatgcctagatac 19382288  T
Q  210 aatgattctcatatagagtcatcgtcttcat 240  Q
    || || |||  |||||| ||||| |||||||    
T  19382287 aacgactctattatagattcatcatcttcat 19382257  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 19456779 - 19456661
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| ||||||||||||| ||||||||| | ||||||||  ||||||||||| | ||||||||||||||| ||| ||  ||| ||||||||     
T  19456779 agtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccaagccgagaaacattgattctct 19456680  T
Q  221 tatagagtcatcgtcttca 239  Q
    |||||||||||| ||||||    
T  19456679 tatagagtcatcatcttca 19456661  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 18872395 - 18872500
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| ||||||||||||| ||||||||| | ||||||||  ||||||||||| | ||||||||||||||||||| || |||| ||||||||     
T  18872395 agtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgccaagatacattgattctct 18872494  T
Q  221 tataga 226  Q
    ||||||    
T  18872495 tataga 18872500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 18148288 - 18148182
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    ||||||||||||| ||||||||| | ||||||||  ||||||||||| | ||||||| |||||||||||||  ||||| || |||| |||||| |||||     
T  18148288 ccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatca 18148189  T
Q  234 tcttcat 240  Q
    |||||||    
T  18148188 tcttcat 18148182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 19352862 - 19352764
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatc 232  Q
    |||||| |||||| ||||||||| | ||||||||  ||||||||||  | |||||||||||||||||||||| ||||||||||||  ||| ||||||||    
T  19352862 ccattttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatgcctagatacaatgattcttttatggagtcatc 19352764  T

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Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19426160 - 19426054
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| |||||| | ||||||| | ||||||||  ||||||||||| | |||||||||||||||| ||||| ||||||||||||   |||||||||||     
T  19426160 ccattttctaataaggaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatca 19426061  T
Q  234 tcttcat 240  Q
    |||||||    
T  19426060 tcttcat 19426054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19438416 - 19438310
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    ||||||||||||| |||||| || | ||||||||  ||| ||||||| | |||||||||||||||||||||| ||||| || |||| |||||| |||||     
T  19438416 ccatttcctaataagaaacatagaaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaacgactctcttatagattcatca 19438317  T
Q  234 tcttcat 240  Q
    |||||||    
T  19438316 tcttcat 19438310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 16678750 - 16678593
Alignment:
Q  71 tatttaaatttaccatcaaagttacatagagcttgtc---------atcgataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatc 160  Q
    ||||||| |||||||||||||||||||| ||||||||         ||| ||||| ||||||||||| |||| ||||||||||||| ||||||||| | |    
T  16678750 tatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccatttcctaataagaaacaaagaacc 16678651  T
Q  161 acaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattct 218  Q
    ||||||   |||||||||||   |||| |||||||||| ||| || ||||||||||||    
T  16678650 acaaataccccagaaacctaccgcaaaaccaactcccaagcccagatacaatgattct 16678593  T

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Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19335482 - 19335376
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| |||||| ||||||||| | ||||||||  ||||||||||  | |||||||||||| ||| ||||| ||||||||||||| || |||||| ||     
T  19335482 ccattttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactctcatccctagatacaatgattctcttaaagagtcgtca 19335383  T
Q  234 tcttcat 240  Q
    |||||||    
T  19335382 tcttcat 19335376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 19465918 - 19465738
Alignment:
Q  48 aggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacatagagcttgtcatcgat---------aaactgatagtatgtatgcc-ccat 137  Q
    |||||||||||||  | ||||  ||||||| |||||| ||||||| ||||||||||||||| | ||         |||| || |||||| ||||| ||||    
T  19465918 aggagctcaatttctgcgaaagctatttaactttaccgtcaaagtaacatagagcttgtcacctattccatatataaaccgaaagtatgcatgcctccat 19465819  T
Q  138 ttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattct 218  Q
    ||||||||| ||||||||| | ||||||||  ||||||||||  | |||||||||||||| | | ||| ||||||||||||    
T  19465818 ttcctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccgtccttagatacaatgattct 19465738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 24493190 - 24493375
Alignment:
Q  22 tctgtttggaactacccttaaccagcaggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacatagagcttgtca---------tcga 112  Q
    |||||||||||||| ||||||| ||||||| |||| |||  ||||||  |||  || || ||||||||||||||||||| | |||||         ||||    
T  24493190 tctgtttggaactaaccttaactagcaggaactcattttctgtgaaagctat--aacttcaccatcaaagttacatagatcctgtcacccactccatcga 24493287  T
Q  113 taaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccat 199  Q
    ||||| | ||||| |  |||| ||||||||||||| |||| |||||| |||| |||||||| ||||||| |||||| |||||||||||    
T  24493288 taaaccggtagtacgcgtgcctccatttcctaataagaaataaaggaccacacatcaaccaaaaacctactccaaacccaactcccat 24493375  T

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Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 17951316 - 17951209
Alignment:
Q  112 ataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtaca 210  Q
    |||||| || |||||| ||||| |||||| | |||| ||||||||| | ||||||||  ||||||||||| | ||||||| |||||||| || |||||||    
T  17951316 ataaaccgaaagtatgcatgcctccattttcgaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaaggtaca 17951217  T
Q  211 atgattct 218  Q
    ||||||||    
T  17951216 atgattct 17951209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 18109913 - 18109802
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| ||||||||| |||  |||||||| | ||||||||  ||||||||||| | ||||||| |||||||| || |||||||||||||||      
T  18109913 agtatgcatgcctccatttcctgataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaaggtacaatgattcttt 18109814  T
Q  221 tatagagtcatc 232  Q
    |||||| |||||    
T  18109813 tatagattcatc 18109802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 19355198 - 19355079
Alignment:
Q  122 agtatgtatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctca 220  Q
    |||||| ||||| |||||| |||||  ||||||||| |   ||||||  ||||||||||| | |||||||||||||||||||||| ||||||||||||      
T  19355198 agtatgcatgcctccattttctaattagaaacaaagaacggcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattcttt 19355099  T
Q  221 tatagagtcatcgtcttcat 240  Q
     |||||||| || |||||||    
T  19355098 gatagagtcgtcatcttcat 19355079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 17943424 - 17943318
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| ||||||  |||||||| | ||||||||  ||| ||||||  | |||||||||| |||||||| ||||||| |||||||  ||||||||||||     
T  17943424 ccattttctaataaaaaacaaagaaccacaaatcccccaaaaacctgctgcaaatccaacccccatgccaaggtacagtgattcttttatagagtcatca 17943325  T
Q  234 tcttcat 240  Q
    |||||||    
T  17943324 tcttcat 17943318  T

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Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 18017492 - 18017394
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatc 232  Q
    |||||| |||||  ||||||||| | ||||||||  ||||||||||  | |||| ||||||||||||||||| ||||||||||||  |||||| |||||    
T  18017492 ccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaagccaactcccatgcctagatacaatgattcttttatagattcatc 18017394  T

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Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19401196 - 19401090
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||| |||||  ||||||||| | ||||||||  ||||||||||| | ||||||| ||||||||||| |||||||| ||||||  |||||| || ||     
T  19401196 ccattttctaatgagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgccaaggtacaacgattcttttatagattcgtca 19401097  T
Q  234 tcttcat 240  Q
    |||||||    
T  19401096 tcttcat 19401090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 19462650 - 19462544
Alignment:
Q  134 ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcg 233  Q
    |||||||| |||| ||||||||| | |||||||   ||||||||||| | ||||||| |||||||||||||  ||||| || |||| |||||| |||||     
T  19462650 ccatttccgaataagaaacaaagaaccacaaatgccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatca 19462551  T
Q  234 tcttcat 240  Q
    |||||||    
T  19462550 tcttcat 19462544  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 2709032 - 2709207
Alignment:
Q  73 tttaaatttaccatcaaagttacatagagcttgtca---------tcgataaactgatagtatgtatgcc-ccatttcctaatatgaaacaaaggatcac 162  Q
    ||||| |||| |||||||||||||||||||||||||         || |||||| |||||||||| | || ||||||||||||| ||||||||||| |||    
T  2709032 tttaactttatcatcaaagttacatagagcttgtcacctactccatcaataaaccgatagtatgtgttcctccatttcctaataagaaacaaaggaccac 2709131  T
Q  163 aaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcgtcttc 238  Q
    |||||  ||| ||||||| | |||||||||||||||||||||| ||||||||||||| |||||| || ||||||||    
T  2709132 aaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaatgattctcttatagattcgtcgtcttc 2709207  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 15537110 - 15536897
Alignment:
Q  37 ccttaaccagcaggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacatagagcttgtcatcga---------taaactgatagtatg 127  Q
    ||||||| ||||||||||||||||  |||||| || ||||| ||||| |||||||| ||||||| ||||||| | |         ||||| || ||||||    
T  15537110 ccttaactagcaggagctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttgtcacctactttatcagtaaaccgaaagtatg 15537011  T
Q  128 tatgcc-ccatttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatataga 226  Q
     ||||| |||||| |||||| ||||||||| | ||||||||  |||||||||||   |||||||||||||||| ||||| ||||||||||||    ||||    
T  15537010 catgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactcccatccctagatacaatgattctttgttaga 15536911  T
Q  227 gtcatcgtcttcat 240  Q
    |||||| |||||||    
T  15536910 gtcatcatcttcat 15536897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 8461135 - 8460930
Alignment:
Q  45 agcaggagctcaattttagtgaaaaatatttaaatttaccatcaaagttacatagagcttgtca---------tcgataaactgatagtatgtatgcc-c 134  Q
    ||||||||||||||||  | ||||  || |||| |||||||||||| || ||||||||||||||         || |||||  ||||||||| ||||| |    
T  8461135 agcaggagctcaatttctgcgaaatctaattaactttaccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctc 8461036  T
Q  135 catttcctaatatgaaacaaaggatcacaaatcaaccagaaacctattccaaatccaactcccatgcctaggtacaatgattctcatatagagtcatcgt 234  Q
    |||||||||||| ||||||||| | ||||||||  ||| ||||| | | ||||||||||||||||||| || ||||||||||||| |||||||||||| |    
T  8461035 catttcctaataagaaacaaagaaccacaaatcccccaaaaacccactgcaaatccaactcccatgccaagatacaatgattctcttatagagtcatcat 8460936  T
Q  235 cttcat 240  Q
    ||||||    
T  8460935 cttcat 8460930  T

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