View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_low_17 (Length: 249)
Name: NF4685_low_17
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 45374557 - 45374325
Alignment:
| Q |
17 |
agggaatagcatgtggcttcctttctctatttcataggatattgaaatgatgagtaagaagtattaaacaagaaggattttaaaaatatccatttgagca |
116 |
Q |
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| T |
45374557 |
agggaatagcatgtggcttcctttctctatttcataggatattgaaataatgagtaagaagtattaaacatgaaggatgttaaaaatatccatttgagca |
45374458 |
T |
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| Q |
117 |
ctatgctttttattagactattatgtgcatatctcaatatttagaatagcatgattgtaaaacgcaacatatgtcagctctgaagctaatatttacaaat |
216 |
Q |
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| T |
45374457 |
ctatgctttttattagactattatgtgcatagctctatatttagaatagaatgattgtaaaacacaacatatgtcagctctgaagctaatatttacaaat |
45374358 |
T |
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| Q |
217 |
gatatcattggactctatgaaagtgatatcaat |
249 |
Q |
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| T |
45374357 |
gatatcattcgactctatgaaagtgatatcaat |
45374325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 45389715 - 45389483
Alignment:
| Q |
17 |
agggaatagcatgtggcttcctttctctatttcataggatattgaaatgatgagtaagaagtattaaacaagaaggattttaaaaatatccatttgagca |
116 |
Q |
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|||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
45389715 |
agggaatagcatgtggattcttttctctatttcataagatattgaagtgatgagtaagaagtattaaacaagaatgatgttaaaaatatccatttgagct |
45389616 |
T |
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| Q |
117 |
ctatgctttttattagactattatgtgcatatctcaatatttagaatagcatgattgtaaaacgcaacatatgtcagctctgaagctaatatttacaaat |
216 |
Q |
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| T |
45389615 |
ctatgcttttaattagactattatgtgtgtatctctgtatttagaatagcatgattgtaaaacgcaacatatgtcagctctgaaactaatatttacaaat |
45389516 |
T |
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| Q |
217 |
gatatcattggactctatgaaagtgatatcaat |
249 |
Q |
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| T |
45389515 |
aatatcattggactctatgaaagtgatatcaat |
45389483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 22832594 - 22832641
Alignment:
| Q |
127 |
tattagactattatgtgcatatctcaatatttagaatagcatgattgt |
174 |
Q |
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| T |
22832594 |
tattagactattatgtgcatatctctatattcagaataacattattgt |
22832641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 25082242 - 25082190
Alignment:
| Q |
126 |
ttattagactattatgtgcatatctcaatattta-gaatagcatgattgtaaa |
177 |
Q |
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| T |
25082242 |
ttattagactattatgtgaatatctctatatttacgaatatcattattgtaaa |
25082190 |
T |
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