View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_low_3 (Length: 467)
Name: NF4685_low_3
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 39304456 - 39304771
Alignment:
| Q |
11 |
catcatcacaatagcaataaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaa |
110 |
Q |
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| T |
39304456 |
catcatcacaatagcaataaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaa |
39304555 |
T |
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| Q |
111 |
aggatgcaaaagagacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaat |
210 |
Q |
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| T |
39304556 |
aggatgcaaaagagacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaat |
39304655 |
T |
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| Q |
211 |
caatggtgatgatattatttgggctattacaacgttaggctttgaagaatatgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggt |
310 |
Q |
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| T |
39304656 |
caacggtgatgatattatttgggctattacaacgttaggctttgaagaatatgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggt |
39304755 |
T |
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| Q |
311 |
gagaaagttaatgttc |
326 |
Q |
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| T |
39304756 |
gagaaagttaatgttc |
39304771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 389 - 449
Target Start/End: Original strand, 39304828 - 39304888
Alignment:
| Q |
389 |
gatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctc |
449 |
Q |
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| T |
39304828 |
gatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctc |
39304888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 243
Target Start/End: Original strand, 38281618 - 38281774
Alignment:
| Q |
87 |
ttcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatg |
186 |
Q |
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| T |
38281618 |
ttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtg |
38281717 |
T |
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| Q |
187 |
tcaaagagaaaaaagaaagacaatcaatggtgatgatattatttgggctattacaac |
243 |
Q |
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| T |
38281718 |
tcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggctatgacaac |
38281774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 44105492 - 44105545
Alignment:
| Q |
29 |
aaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaag |
83 |
Q |
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| T |
44105492 |
aaagaacaagatcgttttc-tcctatagccaatgtgggtagaatcatgaaaaaag |
44105545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 41866626 - 41866750
Alignment:
| Q |
134 |
gaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatgatattatttggg |
233 |
Q |
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| T |
41866626 |
gaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttggg |
41866725 |
T |
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| Q |
234 |
ctattacaacgttaggctttgaaga |
258 |
Q |
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| T |
41866726 |
cgatgactacgttaggatttgaaga |
41866750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 39786519 - 39786371
Alignment:
| Q |
29 |
aaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacag |
128 |
Q |
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||||| ||||||||||| ||||| ||||| ||||||||||| || |||||| || | | ||| |||||| ||||||||| || ||||| ||||| || |
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| T |
39786519 |
aaagagcaagatcgtttgcttccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctcgaaagatgctaaagaaacca |
39786420 |
T |
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| Q |
129 |
ttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatc |
177 |
Q |
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| T |
39786419 |
tgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatc |
39786371 |
T |
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