View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_low_30 (Length: 213)
Name: NF4685_low_30
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 42504668 - 42504470
Alignment:
| Q |
1 |
aggtggttggatcgagttaggctttacaagatccaattttgatataatnnnnnnnttcaaggcttagacgcgatatatagtatgtcatagacttattttt |
100 |
Q |
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| T |
42504668 |
aggtggttggatcgagttaggctttacaaaatccaattttaatataataaaaaaattcaaggcttagacacgatatatagtatgtcatagacttattttt |
42504569 |
T |
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| Q |
101 |
agatccgacatgtctaacctctttaaaagtttgatatgacatatgttagcatatttataaaaacgtctattttatatgaatgtgtttaactacgtaatt |
199 |
Q |
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| T |
42504568 |
aggtccgacgtgtctaacctctttaaaagtttgatatgacatatattagcatatttataaaaatgtctattttatatgaatgtgtttaactacgtaatt |
42504470 |
T |
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