View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_low_4 (Length: 450)
Name: NF4685_low_4
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 42505335 - 42505121
Alignment:
| Q |
19 |
aaactacactaaaccgataccacaattataaaaactgacccgaattgttataatggtttgtcttgaa-cgaacataattgaactgataagttatatattc |
117 |
Q |
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| T |
42505335 |
aaactacactaaaccgataccacaattataaaaactgatccgaactgttataatggtttttcttgaatcgaacataattgaactgataagttatatattt |
42505236 |
T |
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| Q |
118 |
tggagtttgaaccgaaccagaactacctttacataagaagaaaaatgtgttttttaaaatgtatttctaaacgaattgtatcaaatttctattattaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42505235 |
tggagtttgaaccgaaccagaactacctttacataagaagaaaaatgtgttttttaaaatgtatttctaaacgaattgtatcaaatttctattattaact |
42505136 |
T |
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| Q |
218 |
agtaattagactatt |
232 |
Q |
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||||||||||||||| |
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| T |
42505135 |
agtaattagactatt |
42505121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 286 - 443
Target Start/End: Complemental strand, 42505072 - 42504915
Alignment:
| Q |
286 |
gattttatcgtatgcataaatagtttttgaatttgaacctaactaattcagtccaattcacaaactattaatccaagttcaattttttcggtagaataaa |
385 |
Q |
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|||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42505072 |
gattttatcgtatgcataaatagtctgtgaatt-gaacctaactaattcagtccaattcacaaactattagaacaagttcaattttttcggtagaataaa |
42504974 |
T |
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| Q |
386 |
atgtagtttagttcg-ttctttttaaacaaccctagttacaaaaacaaatagcattgtc |
443 |
Q |
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||||||||||||||| || ||||||||||||| || ||||||||||||||||||||||| |
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| T |
42504973 |
atgtagtttagttcgtttttttttaaacaaccttaattacaaaaacaaatagcattgtc |
42504915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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