View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_low_6 (Length: 363)
Name: NF4685_low_6
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 39934156 - 39934503
Alignment:
| Q |
1 |
agagtgcaatggaataacaaccccatattttt-tacaattgacttagtcaaaattattaaaaaaccattaaacggtggagattgacactggattgtatcc |
99 |
Q |
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| T |
39934156 |
agagtgcagtggaataataaccccatatttttctacaattgacttagtcaaaattattgaaaaaccattaaatggtggagattgacactggactgtatcc |
39934255 |
T |
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| Q |
100 |
agtgaaaaattcattggagagaatccccatccttgagcgacaccctaaaatcttgttgacacttagatgctaatgattttgttgaaatctatgaaattga |
199 |
Q |
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| T |
39934256 |
aatgaaaaattcattggagagaatccccatccttgaacgacacactaaaattttgttgacacttagatgctaatgattttgttgcaatctatgaaattga |
39934355 |
T |
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| Q |
200 |
catgcattctagccactacataattgtatttaaattttatggttctacatcaaatttgaattctctcttttggcataaaccctaaggtatttacttttta |
299 |
Q |
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| T |
39934356 |
tatgcattttagccactgcataattgtatttaaattttatggttctacatcaaatttgaattctctcttttggcataaaccctaaggtatttatttttta |
39934455 |
T |
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| Q |
300 |
tttttgaaatgtttgactccttatctcctcattttgagttctccttga |
347 |
Q |
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| T |
39934456 |
tttttgaaatgtttgactccttatctcctcattttgagttctccttga |
39934503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 4473476 - 4473574
Alignment:
| Q |
1 |
agagtgcaatggaataacaaccccatattttt-tacaattgacttagtcaaaattattaaaaaaccattaaacggtggagattgacactggattgtatc |
98 |
Q |
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| T |
4473476 |
agagtgtagtggattaacaaccccacatttttctacaattgacttagtcaaaattattaaataaccgttcaatggtgtagattggcactggactgtatc |
4473574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 44824972 - 44824906
Alignment:
| Q |
174 |
gattttgttgaaatctatgaaattgacatgcattctagccactacataattgtatttaaattttatg |
240 |
Q |
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| T |
44824972 |
gattttgttcaaatctatgaaattgatatgcattatagcaattacatgattgtattttaattttatg |
44824906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 23322492 - 23322582
Alignment:
| Q |
38 |
ttgacttagtcaaaattattaaaaaaccattaaacggtggagattgacactggattgtatccagtgaaaaattcattggagagaatcccca |
128 |
Q |
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| T |
23322492 |
ttgacttggtcaaaataattaaagagccattggatggtgaagatttacactagactgcatccagtgaaaagttcactggagagaatcccca |
23322582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 7187160 - 7187070
Alignment:
| Q |
41 |
acttagtcaaaattattaaaaaaccattaaacggtggagattgacactggattgtatccagtgaaaaa-ttcattggagagaatccccatcc |
131 |
Q |
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|||| ||||||||||||||| |||||||||| |||||| ||| |||| ||| | ||||| | ||||| ||||||||| ||||||||||||| |
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| T |
7187160 |
acttggtcaaaattattaaataaccattaaatggtggatatttacacgggactatatccgataaaaaagttcattgga-agaatccccatcc |
7187070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 2225231 - 2225316
Alignment:
| Q |
46 |
gtcaaaattattaaaaaaccattaaacggtggagattgacactggattgtatccagtgaaaaattcattggagagaatccccatcc |
131 |
Q |
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| T |
2225231 |
gtcaaaattattaaataaccattaaatggtgaagattggcactcaactatatccaatgaaattttcactacagagaatccccatcc |
2225316 |
T |
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