View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_low_8 (Length: 343)
Name: NF4685_low_8
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 5511671 - 5511355
Alignment:
| Q |
1 |
caaaacaaacaccaaagtgcaaaaacaataaaaccgaggtgcattgggtgcctctaaccgtgttatcaacaaatcacagttccacaactgcattgagcat |
100 |
Q |
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| T |
5511671 |
caaaacaaacaccaaagtgcaaaaacaataaaaccgaggtgcattgggtgcctctaaccgtgttatcaacaaatcaccgttccacaactgcattgagcat |
5511572 |
T |
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| Q |
101 |
aacactcgcatgaccatacatagaataagcaatgtgaaaattattactcataaaattttatcttaacttaggctttaatcttagagaaaatata------ |
194 |
Q |
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| T |
5511571 |
agcactagcatgaccatacatagaataagtaatatgaaaattattactgataaaattttat-----cttaggctttaatgttagagaaaatatatgaagc |
5511477 |
T |
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| Q |
195 |
------tcaaacacagacacacacatcaacaacgataataatttaaaaagatgacataatacaatgtgatcatttatgtcagtgtcgtgtggatgtcaaa |
288 |
Q |
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| T |
5511476 |
ataaactcaaacacagatacacacatcaacaacaataataatttaaaaagatgacataatacaatgtgatcatttatgtcagtgtcgtgtggatatcaaa |
5511377 |
T |
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| Q |
289 |
tatgatatggattcgagaaata |
310 |
Q |
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| T |
5511376 |
tatgatatggattcgagaaata |
5511355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 5511320 - 5511282
Alignment:
| Q |
305 |
gaaataaaacaggaaaatgcatgaaacaataaagcactt |
343 |
Q |
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| T |
5511320 |
gaaagaaaacaggataatgcatgaaacaataaagcactt |
5511282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 31026700 - 31026754
Alignment:
| Q |
221 |
cgataataatttaaaaagatgacataatacaatgtgatcatttatgtcagtgtcg |
275 |
Q |
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| T |
31026700 |
cgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtcg |
31026754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 18570970 - 18571031
Alignment:
| Q |
214 |
tcaacaacgataataatttaaaaagatgacataatacaatgtgatcatttatgtcagtgtcg |
275 |
Q |
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|||||| |||||||||||| | || |||||||||| |||||| ||||| | ||||||||||| |
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| T |
18570970 |
tcaacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcg |
18571031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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