View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685_low_9 (Length: 313)
Name: NF4685_low_9
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 78 - 270
Target Start/End: Complemental strand, 923780 - 923592
Alignment:
| Q |
78 |
tattattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
177 |
Q |
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|||||||||||||| |||||||||||||||||| ||| || | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
923780 |
tattattagaacacatgtccatgtgtttgaaacttagatctgctgcattcatttctaaactctaaaaagacactatttttctatctaaactcttaaagaa |
923681 |
T |
|
| Q |
178 |
atctnnnnnnncaccatttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacactttaaattaatagttattgaaacata |
270 |
Q |
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| T |
923680 |
atctaaaaagacaccatttttcaatccaaactctt-aaagaagaaaaacatatgattagagacacactttaa---aatagtgattgaaacata |
923592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22996495 - 22996457
Alignment:
| Q |
1 |
tgtaagttattaataatgaataaatccaaataacttatt |
39 |
Q |
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| T |
22996495 |
tgtaagttattaataatgaataaatccaaataacttatt |
22996457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 2191743 - 2191819
Alignment:
| Q |
98 |
atgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaa |
174 |
Q |
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| T |
2191743 |
atgtgtttgaaacttatatcagttgcattcatttctaagctcttcaacgacaccttttttctatataagctcttaaa |
2191819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 278
Target Start/End: Original strand, 27540840 - 27541035
Alignment:
| Q |
78 |
tattattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
177 |
Q |
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| T |
27540840 |
tattattagaacacatgtccatgtgtttgaaacttagattatctgcattcatttataagctataaaa-gacaccatttttctatctaaactcttaaagaa |
27540938 |
T |
|
| Q |
178 |
atctnnnnnnncaccatttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattg |
277 |
Q |
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| T |
27540939 |
ctataaaacgacactatttttcaatcaaaattctt-aaagaagaaaaacacatgattaaagacatactttaaat---tagtgattgaaacatagtaattg |
27541034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 295
Target Start/End: Original strand, 46833118 - 46833316
Alignment:
| Q |
79 |
attattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaaa |
178 |
Q |
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| T |
46833118 |
attattagaaaatatgtccatgtatttgaaacttagatcaactgcattcatttttaaactctaaaaagacaccatttttttatctaaactctaaaaaga- |
46833216 |
T |
|
| Q |
179 |
tctnnnnnnncaccatttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattga |
278 |
Q |
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| T |
46833217 |
----------cacca-ttttcaatcgaaactctt-aaagaagaaaaacacatgattagag--acactttaa---aataatgattgaaacatagttattga |
46833299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 45032223 - 45032127
Alignment:
| Q |
81 |
tattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
177 |
Q |
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|||||| |||| |||||||||||||||||| ||| | |||||||| |||| |||||||| ||||||||| ||||| ||||||| |||||||||||| |
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| T |
45032223 |
tattagcacacatgtccatgtgtttgaaacttagataagttgcatacatttataaactcttaaaagacacaattttactatctacactcttaaagaa |
45032127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 4357297 - 4357204
Alignment:
| Q |
83 |
ttagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
177 |
Q |
| |
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||||||||| ||||||||||||| |||| ||| |||| |||||| ||||| ||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
4357297 |
ttagaacacatgtccatgtgttttaaacttagatcagctgcattcatttccaaactct-taaagacacattttttatatctaaactcttaaagaa |
4357204 |
T |
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