View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686-Insertion-1 (Length: 1070)

Name: NF4686-Insertion-1
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686-Insertion-1
NF4686-Insertion-1
[»] chr4 (1 HSPs)
chr4 (25-216)||(21828000-21828198)
[»] chr7 (3 HSPs)
chr7 (25-145)||(39603759-39603879)
chr7 (534-682)||(16413509-16413662)
chr7 (179-216)||(39603892-39603929)
[»] chr3 (5 HSPs)
chr3 (459-614)||(40895713-40895872)
chr3 (534-682)||(24225162-24225315)
chr3 (510-612)||(53046238-53046339)
chr3 (682-870)||(40895894-40896085)
chr3 (235-317)||(40895556-40895638)
[»] scaffold0003 (1 HSPs)
scaffold0003 (534-682)||(2221-2374)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 21828000 - 21828198
Alignment:
Q  25 attttatttaacattaaaaatggtacacaaacataccttgacaaatttctcaatcagccaatgaagttacaaatcagcacccataaaaaataaaaccaat 124  Q
    |||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  21828000 attttatttaacattaaaaattaaacacaaacagaccttgacaaatttctcaatcagccaatgaagttactaatcaacacccataaaaaataaaaccaat 21828099  T
Q  125 ttattgagttataaa-------aaacatcaatctgaaagttacatgtctcaaacataatagttgcaaaataatccttaattttgggttgataacaatga 216  Q
    | ||| |||||||||       ||||||||||||| |  |||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21828100 tcattcagttataaaaaaacataaacatcaatctgtacattattggtctcaaacataatagttgcaaaataatccttgattttgggttgataacaatga 21828198  T

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Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 39603759 - 39603879
Alignment:
Q  25 attttatttaacattaaaaatggtacacaaacataccttgacaaatttctcaatcagccaatgaagttacaaatcagcacccataaaaaataaaaccaat 124  Q
    |||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  39603759 attttatttaacattaaaaatttaacacaaacagaccttgacaaatttctcaatcagccaatgaagttactaatcagcacccatcaaaaataaaaccaat 39603858  T
Q  125 ttattgagttataaaaaacat 145  Q
    | ||||||||| |||||||||    
T  39603859 tcattgagttagaaaaaacat 39603879  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 534 - 682
Target Start/End: Complemental strand, 16413662 - 16413509
Alignment:
Q  534 aaaagaaaaaccctaaaatccccctgaaccacaagaatcaaattcatcaatagaatttccacaacaaacaagaataaaatagaggacaataaaacaacaa 633  Q
    ||||||||||||||||||||  ||| |||||| ||||||||| ||||||||||||||| || | ||||||||||||||| ||| ||||||||||||||||    
T  16413662 aaaagaaaaaccctaaaatcttcctaaaccaccagaatcaaactcatcaatagaattttcaaagcaaacaagaataaaaaagaagacaataaaacaacaa 16413563  T
Q  634 -----atactcactcaaaaattgatggtcgtgaaagtagaactcacatgaagaa 682  Q
         | |  |||| |||||||||||||||||||||| |||||||| |||||||    
T  16413562 cagagaaaaacactaaaaaattgatggtcgtgaaagtggaactcacgtgaagaa 16413509  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 39603892 - 39603929
Alignment:
Q  179 ttgcaaaataatccttaattttgggttgataacaatga 216  Q
    |||||||||||||| | |||||||||||||||||||||    
T  39603892 ttgcaaaataatccatgattttgggttgataacaatga 39603929  T

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Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 459 - 614
Target Start/End: Original strand, 40895713 - 40895872
Alignment:
Q  459 caattctctattgcccaaattgacaacttcaatttgagatttggctagtggcacaattttcccccaaatcaaaggaaaagaaaaa----ccctaaaatcc 554  Q
    ||||||| | ||||| ||||| ||||||||||  |||||||||||||  | ||||||||||||||||||||||  |||| |||||    |||||||||||    
T  40895713 caattctattttgccaaaattaacaacttcaacgtgagatttggctatcgacacaattttcccccaaatcaaaaaaaaaaaaaaaaaacccctaaaatcc 40895812  T
Q  555 ccctgaaccacaagaatcaaattcatcaatagaatttccacaacaaacaagaataaaata 614  Q
    ||||  || ||||||||||||||||||||||||| |||||||| |||||||||| |||||    
T  40895813 ccctacacaacaagaatcaaattcatcaatagaacttccacaaaaaacaagaatcaaata 40895872  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 534 - 682
Target Start/End: Original strand, 24225162 - 24225315
Alignment:
Q  534 aaaagaaaaaccctaaaatccccctgaaccacaagaatcaaattcatcaatagaatttccacaacaaacaagaataaaatagaggacaataaaacaacaa 633  Q
    ||||||||||||||||||||  ||| |||||| ||||||||| ||||||||||||||| || | ||||||||||||||| ||| ||||||||||||||||    
T  24225162 aaaagaaaaaccctaaaatcttcctaaaccaccagaatcaaactcatcaatagaattttcaaagcaaacaagaataaaaaagaagacaataaaacaacaa 24225261  T
Q  634 -----atactcactcaaaaattgatggtcgtgaaagtagaactcacatgaagaa 682  Q
         | |  |||| ||||||||||||| |||||||| |||||||| |||||||    
T  24225262 cagagaaaaacactaaaaaattgatggttgtgaaagtggaactcacgtgaagaa 24225315  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 510 - 612
Target Start/End: Original strand, 53046238 - 53046339
Alignment:
Q  510 cacaattttcccccaaatcaaaggaaaagaaaaaccctaaaatccccctgaaccacaagaatcaaattcatcaatagaatttccacaacaaacaagaata 609  Q
    |||||||| ||| |||| |||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  53046238 cacaatttcccctcaaaccaaaagaaaagataaaccctaaaatcccc-taaaccacaagaatcaaattcatcaatagaatttccaaagcaaacaagaata 53046336  T
Q  610 aaa 612  Q
    |||    
T  53046337 aaa 53046339  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 682 - 870
Target Start/End: Original strand, 40895894 - 40896085
Alignment:
Q  682 aaaatcattagatgtagaggagacccttgaagcttcgtaccctattc--aaacaaggatgaatgaaggtgtagggagaacgagggtagaacataaacgtg 779  Q
    ||||||||||| ||  || |||||||||||||||| ||||||||| |  |||||||||| |||||||||| | ||||||||||||||||  | ||| ||     
T  40895894 aaaatcattaggtgcggatgagacccttgaagctttgtaccctatgcaaaaacaaggataaatgaaggtg-aaggagaacgagggtagataagaaatgta 40895992  T
Q  780 cttttgactaagcagaaacctcaaacggtcgcccaacacacggagattagtcgaagaaagag---aaacgagggtggaggagggtcgtgaatga 870  Q
     ||||||||| ||| ||||| ||||| |||| |||||| | | |||| ||||||||| ||||   ||||||||||| ||||||||| |||||||    
T  40895993 attttgactacgcataaaccacaaaccgtcg-ccaacataggaagatcagtcgaagacagagagaaaacgagggtgaaggagggtcttgaatga 40896085  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 40895556 - 40895638
Alignment:
Q  235 attgaaactaacctcacgatcgttgctgaaatatcaaccaccaacctaaagttcattcagaaaagagtgttagtattagttaa 317  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||||||| | |||||| ||||| ||||| ||||||    
T  40895556 attgaaactaacctcactgtagttgctgaaatatcaaccaccaacctaaagttcaatgagaaaaaagtgtcagtatcagttaa 40895638  T

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Target: scaffold0003 (Bit Score: 70; Significance: 5e-31; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 534 - 682
Target Start/End: Complemental strand, 2374 - 2221
Alignment:
Q  534 aaaagaaaaaccctaaaatccccctgaaccacaagaatcaaattcatcaatagaatttccacaacaaacaagaataaaatagaggacaataaaacaacaa 633  Q
    ||||||||||||||||||||  ||| |||||| ||||||||| ||||||||||||||| || | ||||||||||||||| ||| ||||||||||||||||    
T  2374 aaaagaaaaaccctaaaatcttcctaaaccaccagaatcaaactcatcaatagaattttcaaagcaaacaagaataaaaaagaagacaataaaacaacaa 2275  T
Q  634 -----atactcactcaaaaattgatggtcgtgaaagtagaactcacatgaagaa 682  Q
         | |  |||| |||||||||||||||||||||| |||||||| |||||||    
T  2274 cagagaaaaacactaaaaaattgatggtcgtgaaagtggaactcacgtgaagaa 2221  T

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