View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686-Insertion-10 (Length: 383)
Name: NF4686-Insertion-10
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 42634723 - 42634351
Alignment:
| Q |
8 |
gttgttggagttttgtagatggttaccacaatattaaggacaacttaatcagattcaaggaatgtggttacggcaattggagacgatggatcgacatatt |
107 |
Q |
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| T |
42634723 |
gttgttggagttttgtagatggttaccacaatattaaggagaacttaatcagattcatggaatgtgattacggcaattggagacgatgtatcgacatatt |
42634624 |
T |
|
| Q |
108 |
tagaaaaaattgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattactt |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42634623 |
tagaaacaattgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattactt |
42634524 |
T |
|
| Q |
208 |
agaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccgtcctttttaatgaaattggtttcatttnnnnnnnnnnnnnnntta |
307 |
Q |
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| T |
42634523 |
agcaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatcctttttaatgaaattggtttcatttaaaaaaaataaaaaatta |
42634424 |
T |
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| Q |
308 |
acaatacaatagaaaactcaacttcttcgaaaaatatttgttttccattccattaactaccacattgccattt |
380 |
Q |
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| T |
42634423 |
acaatacaatagaaaactcaacttcttcaaaaaatatatgttttccattccattaactaacacattgccattt |
42634351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 25518369 - 25518169
Alignment:
| Q |
56 |
tcagattcaaggaatgtggttacggcaattggagacga------tggatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtcttagct |
149 |
Q |
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|||||||||||||||||| |||||||||||| |||||| || ||| || ||||||| || |||||||||||||||||||||||| |||| ||||| |
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| T |
25518369 |
tcagattcaaggaatgtgattacggcaattgaagacgagtttcatgtatcaacctatttaggaacaattgtaaatgagtgcatcaaactaagtcctagct |
25518270 |
T |
|
| Q |
150 |
ttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggat |
249 |
Q |
| |
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||||||| ||||| |||||||||||||| || ||||||||| | ||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||| |
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| T |
25518269 |
ttaattcaattagctttgctcatgttaggcgtgtggctaaccaagctgcgcattacttagcaaaatttgctctttcatccaattcggactttgtttggat |
25518170 |
T |
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| Q |
250 |
c |
250 |
Q |
| |
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| |
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| T |
25518169 |
c |
25518169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 258
Target Start/End: Original strand, 37433058 - 37433267
Alignment:
| Q |
54 |
aatcagattcaaggaatgtggttacggcaattggagacga------tggatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtcttag |
147 |
Q |
| |
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|||||||||||||||||||| |||||| |||| |||||| || || ||| ||||||| || |||||||||||| |||||||| | |||| || |
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| T |
37433058 |
aatcagattcaaggaatgtgattacggtgattgaagacgagtttcatgtattgacctatttaggaacaattgtaaatgaatgcatcaat-taagtcctaa |
37433156 |
T |
|
| Q |
148 |
ctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgg |
247 |
Q |
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|||||| | |||||| ||||||| |||||| || ||||||||| | | || |||||||||| |||||||||||||| |||||||| ||| |||| ||| |
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| T |
37433157 |
ctttaactatattagctttgctcgtgttaggcgtgtggctaaccaagttgtgcattacttagcaaaatttgctctttcttccaattcagactttgtatgg |
37433256 |
T |
|
| Q |
248 |
atcgaagaaac |
258 |
Q |
| |
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||||||||||| |
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| T |
37433257 |
atcgaagaaac |
37433267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 31617071 - 31617120
Alignment:
| Q |
200 |
cattacttagaaaaatttgctcttttatccaattcggaccttgtttggat |
249 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||||| |||||||| |
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|
| T |
31617071 |
cattacttagcaaaattttatctttcatccaattcggacctagtttggat |
31617120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 261
Target Start/End: Complemental strand, 7184928 - 7184771
Alignment:
| Q |
104 |
tatttagaaaaaattgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacatt |
203 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||| || ||||||||| | | ||| |||| |
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| T |
7184928 |
tatttaggaacaattgtaaatgagggcatcaaaccaagtcctagctttaactctattagttttgctcatgttaggcgtgtggctaaccaagttgcgcatt |
7184829 |
T |
|
| Q |
204 |
acttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactcc |
261 |
Q |
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|| ||| ||||||| |||||| | | |||| | || ||||||||||||||||||||| |
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| T |
7184828 |
acctagcaaaattttctctttcacctaatttgaactctgtttggatcgaagaaactcc |
7184771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 30941983 - 30941892
Alignment:
| Q |
117 |
ttgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattactta |
208 |
Q |
| |
|
||||||| ||||| |||||||| | | |||||||||||||||||| ||||||||| ||||||| || |||||| | ||||||||||||||| |
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| T |
30941983 |
ttgtaaacgagtgtatcaaactaaattctagctttaattctattagctttgctcatattagacgtgtagctaaccaagctgcacattactta |
30941892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 20589198 - 20589310
Alignment:
| Q |
149 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgga |
248 |
Q |
| |
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||||||| |||||| ||| |||||||||| | ||||||||| | |||| ||||| |||| || ||||||||||| ||||||||| || || |||||| |
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| T |
20589198 |
tttaattttattagctttactcatgttaggtgtgtggctaaccaagctgagcattatttagcaatatttgctctttcatccaattcaaactttttttgga |
20589297 |
T |
|
| Q |
249 |
tcgaagaaactcc |
261 |
Q |
| |
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|||||| |||||| |
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| T |
20589298 |
tcgaagtaactcc |
20589310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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