View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686-Insertion-12 (Length: 310)
Name: NF4686-Insertion-12
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686-Insertion-12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 3038051 - 3037753
Alignment:
| Q |
12 |
tcagagcctcttcaagatccttggaagcgacagtgatcttcctttccctgagttgcaacatattcaactttagtagtagaaagagtgacaatagactgct |
111 |
Q |
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| T |
3038051 |
tcagagcctcttcaagatccttggaagcgacagtgatcttcctttccctgagttgcaacatattcaacattagtagtagaaagactgacaatagactgct |
3037952 |
T |
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| Q |
112 |
tcttagatgaccatgatattgttccattttcaatcatgtaaacatgccctgaggtgcttttcctatcatcagtatccccaacataatcagtgtctgacca |
211 |
Q |
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| T |
3037951 |
tcttagatgaccatgatattgttccatttccaatcatgtaaacatgccctgaggtgcttttcctatcatcagtatccccaacataatcagtgtcttacca |
3037852 |
T |
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| Q |
212 |
accaatctcaccttttcatccttcttatacatcactcctgagctcacatttccttttgggatcggatgaagtactgaataaagctaggttattatgttg |
310 |
Q |
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| T |
3037851 |
accaatctaaccttttcatccttcttatacatcactcctgagctcacatttccttttaggatcggatgaagtactgaataaagctaggttattatgttg |
3037753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 2083780 - 2083667
Alignment:
| Q |
67 |
caacatattcaactttagtagtagaaagagtgacaatagactgcttcttagatgaccatgatattgttccattttcaatcatgtaaacatgccctgaggt |
166 |
Q |
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| T |
2083780 |
caacatactcaacttcagtagtagaaaaagtaacaattggttgcttcttagatgaccaagatattgctccatttcctatcatgtacacataccttgaggt |
2083681 |
T |
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| Q |
167 |
gcttttcctatcat |
180 |
Q |
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| T |
2083680 |
acttttcctgtcat |
2083667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 16866329 - 16866274
Alignment:
| Q |
65 |
tgcaacatattcaactttagtagtagaaagagtgacaatagactgcttcttagatg |
120 |
Q |
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| T |
16866329 |
tgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatg |
16866274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 12693089 - 12692987
Alignment:
| Q |
64 |
ttgcaacatattcaactttagtagtagaaagagtgacaatagactgcttcttagatgaccatgatattgttccattttcaatcatgtaaacatgccctga |
163 |
Q |
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| T |
12693089 |
ttgcaacatactcagctttggtagtagaaagagtcataattggttgcttcttagatgatcaagatatagctccattttccaccatggacacataccctga |
12692990 |
T |
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| Q |
164 |
ggt |
166 |
Q |
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||| |
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| T |
12692989 |
ggt |
12692987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 14178746 - 14178642
Alignment:
| Q |
65 |
tgcaacatattcaactttagtagtagaaagagtgacaatagactgcttcttagatgaccatgatattgttccattttcaatcatgtaaacatgccctgag |
164 |
Q |
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||||||| ||||| ||| ||||||||||||||| ||||| | || |||| |||||||||| ||||| | ||||||| | | |||||| |||| || ||| |
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| T |
14178746 |
tgcaacaaattcagcttcagtagtagaaagagtcacaattggcttcttcatagatgaccaggatatagctccatttcccaccatgtacacataccatgaa |
14178647 |
T |
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| Q |
165 |
gtgct |
169 |
Q |
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||||| |
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| T |
14178646 |
gtgct |
14178642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 23938910 - 23938950
Alignment:
| Q |
99 |
acaatagactgcttcttagatgaccatgatattgttccatt |
139 |
Q |
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| T |
23938910 |
acaattgactgcttcttaaatgaccatgatattgctccatt |
23938950 |
T |
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