View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686-Insertion-13 (Length: 284)

Name: NF4686-Insertion-13
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686-Insertion-13
NF4686-Insertion-13
[»] chr6 (10 HSPs)
chr6 (8-284)||(11132906-11133182)
chr6 (78-261)||(11196658-11196841)
chr6 (8-232)||(11156234-11156458)
chr6 (78-262)||(11199822-11200006)
chr6 (78-284)||(11161049-11161255)
chr6 (78-268)||(11275882-11276072)
chr6 (78-232)||(11209356-11209510)
chr6 (12-220)||(11170546-11170754)
chr6 (117-284)||(11241511-11241679)
chr6 (78-220)||(11314783-11314925)
[»] scaffold1207 (1 HSPs)
scaffold1207 (78-268)||(816-1006)
[»] chr7 (5 HSPs)
chr7 (72-262)||(7877777-7877967)
chr7 (66-122)||(8654524-8654580)
chr7 (65-119)||(8628609-8628663)
chr7 (69-122)||(8576400-8576453)
chr7 (66-142)||(8590692-8590768)
[»] chr2 (3 HSPs)
chr2 (65-139)||(16662029-16662103)
chr2 (72-125)||(14703479-14703532)
chr2 (65-121)||(12234764-12234820)
[»] chr1 (1 HSPs)
chr1 (66-125)||(4678596-4678655)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 11133182 - 11132906
Alignment:
Q  8 aggaggtggtactttggatgtgtctattctcacattcgataagaatggaatcaccactaaagccactgctggagatactcacctcgggggacaagacttt 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11133182 aggaggtggtacattggatgtgtctattctcacattcgataagaatggaatcaccactaaagccactgctggagatactcacctcgggggacaagacttt 11133083  T
Q  108 gataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatccaaaagcccttaggcggttgaagtctgcat 207  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  11133082 gataacacaatggtgaaccatttcgtgaaagagttcttgaggaagcataaaattgacattagtggagatcgaaaagcccttagacggttgaagtctgcat 11132983  T
Q  208 gtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagggatagat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11132982 gtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagggatagat 11132906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 78 - 261
Target Start/End: Complemental strand, 11196841 - 11196658
Alignment:
Q  78 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 177  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11196841 ggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatc 11196742  T
Q  178 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatag 261  Q
    ||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||    ||||||  |||||| ||||||||||    
T  11196741 caagagcccttaggaggttgaagtctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagatag 11196658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 11156458 - 11156234
Alignment:
Q  8 aggaggtggtactttggatgtgtctattctcacattcgataagaatggaatcaccactaaagccactgctggagatactcacctcgggggacaagacttt 107  Q
    |||||||||||||||||| ||||| ||||||||||| || ||   ||  ||||    ||| || | ||| ||||| |||||||| |||||||||||||||    
T  11156458 aggaggtggtactttggacgtgtccattctcacatttgagaaaggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagacttt 11156359  T
Q  108 gataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatccaaaagcccttaggcggttgaagtctgcat 207  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |    
T  11156358 gataatacaatggtgaaccattttgtgaatgagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgctt 11156259  T
Q  208 gtgagaaagcaaagaggatactttc 232  Q
    | ||||||||||| |||||||||||    
T  11156258 gcgagaaagcaaaaaggatactttc 11156234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 11200006 - 11199822
Alignment:
Q  78 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 177  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11200006 ggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatc 11199907  T
Q  178 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagataga 262  Q
    ||| |||||||||| ||| ||||||||| || ||||||||||| |||||||||||    ||||||  |||||| |||||||||||    
T  11199906 caagagcccttaggaggtagaagtctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagataga 11199822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 78 - 284
Target Start/End: Complemental strand, 11161255 - 11161049
Alignment:
Q  78 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 177  Q
    ||||| ||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11161255 ggagacactcaccttaggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatc 11161156  T
Q  178 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagg 277  Q
    ||| |||||||||| ||||||| ||||| || ||||||||||| |||||||||||    ||||||  |||||| |||||||||||  ||||  |||||||    
T  11161155 caagagcccttaggaggttgaactctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagatagagagtttaaatcaagg 11161056  T
Q  278 gatagat 284  Q
     ||||||    
T  11161055 aatagat 11161049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 78 - 268
Target Start/End: Complemental strand, 11276072 - 11275882
Alignment:
Q  78 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 177  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||    
T  11276072 ggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgaggaagcataaaaatgacattagtggagatc 11275973  T
Q  178 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgttt 268  Q
    ||| |||| ||||| || ||||| |||| || |||| || ||| |||||||||||    |||| |||||| || |||||||||||||||||    
T  11275972 caagagccattaggaggctgaagactgcttgcgagagagtaaaaaggatactttctgtcaatagtgagactaccattgagatagaatgttt 11275882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 78 - 232
Target Start/End: Complemental strand, 11209510 - 11209356
Alignment:
Q  78 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 177  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||| | ||||| |||||||||||| |||    
T  11209510 ggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaatc 11209411  T
Q  178 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttc 232  Q
    ||| |||||||||| || ||||| |||| || |||| |||||| |||||||||||    
T  11209410 caagagcccttaggaggctgaagactgcttgcgagagagcaaaaaggatactttc 11209356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 11170754 - 11170546
Alignment:
Q  12 ggtggtactttggatgtgtctattctcacattcgataagaatggaatcaccactaaagccactgctggagatactcacctcgggggacaagactttgata 111  Q
    |||||||||||||| |||||| |||||||||| || ||   ||  ||||    ||| |||||||  ||||| ||||||||||||||||||||||||||||    
T  11170754 ggtggtactttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccactggaggagacactcacctcgggggacaagactttgata 11170655  T
Q  112 acacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatccaaaagcccttaggcggttgaagtctgcatgtga 211  Q
    |  |||||||||||||||| ||||||||||||| ||| || |||||| | ||||||||||||||||||| |||| ||||| || ||||| |||| || ||    
T  11170654 atgcaatggtgaaccattttgtgaaagagttcttgagaaaacataaactcgacattagtggagatccaagagccattaggaggctgaagactgcttgcga 11170555  T
Q  212 gaaagcaaa 220  Q
    || ||||||    
T  11170554 gagagcaaa 11170546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 284
Target Start/End: Original strand, 11241511 - 11241679
Alignment:
Q  117 atggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatccaaaagcccttaggcggttgaagtctgcatgtgagaaag 216  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||||| ||||||||||||| || |||||||    
T  11241511 atggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtagagatccaagagcccttaggaggttgaagtctgcttgcgagaaag 11241610  T
Q  217 c-aaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagggatagat 284  Q
    | ||| ||||||||||     ||||||  |||||| |||||||||||  ||||  ||||||| ||||||    
T  11241611 caaaaaaggatactttattccaatactacgaccaccattgagatagagagtttaaatcaaggtatagat 11241679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 11314783 - 11314925
Alignment:
Q  78 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 177  Q
    ||||| |||||||| ||||||||||||||  |||| |||||||||||  |||| ||| ||| ||||  || || | ||||||| |||||||||||||||     
T  11314783 ggagacactcaccttgggggacaagacttcaataatacaatggtgaaatattttgtggaagtgttccggaagaggtataaaatagacattagtggagatt 11314882  T
Q  178 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaa 220  Q
     || | |||||||| |||||||||| || || |||||||||||    
T  11314883 taacatcccttaggaggttgaagtcagcttgcgagaaagcaaa 11314925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 268
Target Start/End: Complemental strand, 1006 - 816
Alignment:
Q  78 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 177  Q
    ||||| ||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||| |||||  |||||| ||||||| ||||||||||||||||    
T  1006 ggagacactcacctcagggggcaagactttgataacgcaatggtgaaccattttgtgaaagtgttcttaaggaagtataaaatcgacattagtggagatc 907  T
Q  178 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgttt 268  Q
    ||| |||| ||||| || ||||| |||| ||||||| | |||| |||||||||||    |||||| |||| || ||||||||||| |||||    
T  906 caagagccgttaggaggctgaagactgcttgtgagagatcaaaaaggatactttctgtcaatacttagactaccattgagatagagtgttt 816  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 7877777 - 7877967
Alignment:
Q  72 actgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtg 171  Q
    ||||| |||||||||||||| || ||| | ||||||||||||| |||| |||||||||| ||||  |||||   ||||||| ||||| | |||||| |||    
T  7877777 actgccggagatactcacctaggtggagaggactttgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataaagtggacattggtg 7877876  T
Q  172 gagatccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagataga 262  Q
    || | || |  ||||||||| ||||||   ||||||||||||  || || |||| ||| ||   | |||||||||| |||||||| |||||    
T  7877877 gaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacataga 7877967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 8654580 - 8654524
Alignment:
Q  66 aaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtg 122  Q
    ||||||||||||||| | || ||||| |||||| ||||||||||||||| |||||||    
T  8654580 aaagccactgctggaaacacgcacctagggggagaagactttgataacagaatggtg 8654524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 8628663 - 8628609
Alignment:
Q  65 taaagccactgctggagatactcacctcgggggacaagactttgataacacaatg 119  Q
    |||||||||||||||| |||||||||| || ||| | ||||||||||||| ||||    
T  8628663 taaagccactgctggaaatactcaccttggtggagaggactttgataacagaatg 8628609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 8576453 - 8576400
Alignment:
Q  69 gccactgctggagatactcacctcgggggacaagactttgataacacaatggtg 122  Q
    |||||||| ||||| |||||||| || || |||||||||||||||| |||||||    
T  8576453 gccactgccggagacactcacctaggaggccaagactttgataacataatggtg 8576400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 8590768 - 8590692
Alignment:
Q  66 aaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagtt 142  Q
    ||||||||| | |||||||| ||||| || ||| | ||||||||||||| ||||||  ||||||| ||||| |||||    
T  8590768 aaagccacttccggagatacccacctaggaggagaggactttgataacagaatggttcaccatttggtgaaggagtt 8590692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 16662029 - 16662103
Alignment:
Q  65 taaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaaga 139  Q
    |||||||||| ||||| | ||||||||||||||| | ||||||||||||| |||| ||||| | || ||||||||    
T  16662029 taaagccacttctggaaacactcacctcgggggagaggactttgataacagaatgttgaactactttgtgaaaga 16662103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 14703532 - 14703479
Alignment:
Q  72 actgctggagatactcacctcgggggacaagactttgataacacaatggtgaac 125  Q
    ||||||||| | ||||||||||||||| | ||||| ||||||| ||||||||||    
T  14703532 actgctggaaacactcacctcgggggagaggacttcgataacagaatggtgaac 14703479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 12234820 - 12234764
Alignment:
Q  65 taaagccactgctggagatactcacctcgggggacaagactttgataacacaatggt 121  Q
    ||||||||| || ||| | ||||||||||||||| | ||||||||||||| ||||||    
T  12234820 taaagccacagccggaaacactcacctcgggggagaggactttgataacagaatggt 12234764  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 4678596 - 4678655
Alignment:
Q  66 aaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaac 125  Q
    ||||||||||||||| | |||||||| || ||| | ||||||||||||| ||||||||||    
T  4678596 aaagccactgctggaaacactcacctaggtggagaggactttgataacagaatggtgaac 4678655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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