View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686-Insertion-17 (Length: 178)

Name: NF4686-Insertion-17
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686-Insertion-17
NF4686-Insertion-17
[»] chr5 (10 HSPs)
chr5 (9-81)||(38169180-38169252)
chr5 (9-81)||(38197852-38197924)
chr5 (9-77)||(38187777-38187845)
chr5 (9-77)||(38210512-38210580)
chr5 (9-81)||(38453677-38453749)
chr5 (108-178)||(38187678-38187748)
chr5 (108-178)||(38210609-38210679)
chr5 (108-178)||(38453775-38453845)
chr5 (108-174)||(38178599-38178665)
chr5 (108-174)||(38205823-38205889)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 1e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 38169252 - 38169180
Alignment:
Q  9 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgcatacc 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38169252 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgcatacc 38169180  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 38197852 - 38197924
Alignment:
Q  9 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgcatacc 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38197852 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgcatacc 38197924  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 38187845 - 38187777
Alignment:
Q  9 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187845 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgca 38187777  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 38210512 - 38210580
Alignment:
Q  9 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38210512 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgca 38210580  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 38453677 - 38453749
Alignment:
Q  9 aagccatataacttatatcccattttgtttttgaaaacttatcccatttatattgccatgtatatcgcatacc 81  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  38453677 aagccatataacttatatcccattttgttttggaaaacttatcccatttatattgtcatgtatatcgcatacc 38453749  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 38187748 - 38187678
Alignment:
Q  108 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgtagtat 178  Q
    ||||||||||||||||||||||| ||| |||||||||||       |||||||||||||||||||||||||    
T  38187748 gaaaaatctgcaattagtgaagggtagatttggaataataaaaaaatccaaaagcaaaacgagtgtagtat 38187678  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 38210609 - 38210679
Alignment:
Q  108 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgtagtat 178  Q
    ||||||||||||||||||||||| ||| |||||||||||       |||||||||||||||||||||||||    
T  38210609 gaaaaatctgcaattagtgaagggtagatttggaataataaaaaaatccaaaagcaaaacgagtgtagtat 38210679  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 38453775 - 38453845
Alignment:
Q  108 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgtagtat 178  Q
    |||||||||||||||| |||||| |||||||||||||||       ||||||||||||| |||||||||||    
T  38453775 gaaaaatctgcaattaatgaagggtaggtttggaataataaaaaaatccaaaagcaaaaagagtgtagtat 38453845  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 38178599 - 38178665
Alignment:
Q  108 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgta 174  Q
    ||||||| |||||||| ||||||||||||||||||||||       ||||||||||||| |||||||    
T  38178599 gaaaaatttgcaattaatgaaggttaggtttggaataataaaaaaatccaaaagcaaaaagagtgta 38178665  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 38205823 - 38205889
Alignment:
Q  108 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgta 174  Q
    ||||||| |||||||| ||||||||||||||||||||||       ||||||||||||| |||||||    
T  38205823 gaaaaatttgcaattaatgaaggttaggtttggaataataaaaaaatccaaaagcaaaaagagtgta 38205889  T

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