View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4686-Insertion-18 (Length: 151)
Name: NF4686-Insertion-18
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686-Insertion-18 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 144; Significance: 5e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 2899704 - 2899847
Alignment:
| Q |
8 |
agaagatccatgagagtgttgtcatggatctttgtcaggtattggatcaagagttggacgctttggagattgaaactgtccagaaggaaacaatccatcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2899704 |
agaagatccatgagagtgttgtcatggatctttgtcaggtattggatcaagagttggacgctttggagattgaaactgtccagaaggaaacaatccatcc |
2899803 |
T |
|
| Q |
108 |
taggaagagttacaaaatgaacagttcttgtgcagacatccttc |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2899804 |
taggaagagttacaaaatgaacagttcttgtgcagacatccttc |
2899847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 44778285 - 44778142
Alignment:
| Q |
8 |
agaagatccatgagagtgttgtcatggatctttgtcaggtattggatcaagagttggacgctttggagattgaaactgtccagaaggaaacaatccatcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44778285 |
agaagatccatgagagtgttgtcatggatctttgtcaggttttggatcaagagttggacgctttggagattgagactgtccagaaggaaacaatccatcc |
44778186 |
T |
|
| Q |
108 |
taggaagagttacaaaatgaacagttcttgtgcagacatccttc |
151 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44778185 |
taggaaaagttacaaaatgaacagttcttgtgccgacatccttc |
44778142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 39875137 - 39874996
Alignment:
| Q |
8 |
agaagatccatgagagtgttgtcatggatctttgtcaggtattggatcaagagttggacgctttggagattgaaactgtccagaaggaaacaatccatcc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
39875137 |
agaagatccatgag--tgttgtcatggatctttgtcaggttttggatcaagagttggacgctttggagattgagactgttcagaaggaaacaatccatcc |
39875040 |
T |
|
| Q |
108 |
taggaagagttacaaaatgaacagttcttgtgcagacatccttc |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39875039 |
taggaagagttacaaaatgaacagttcttgtgcggacatccttc |
39874996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University