View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686-Insertion-19 (Length: 119)

Name: NF4686-Insertion-19
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686-Insertion-19
NF4686-Insertion-19
[»] chr2 (1 HSPs)
chr2 (7-119)||(41381085-41381197)
[»] chr6 (3 HSPs)
chr6 (7-119)||(7970637-7970749)
chr6 (7-119)||(8042960-8043072)
chr6 (10-112)||(8032989-8033088)
[»] scaffold0531 (1 HSPs)
scaffold0531 (10-112)||(2017-2116)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 41381085 - 41381197
Alignment:
Q  7 acattacgcacaacaaaacgaaggattttacttgatttgaaattcaatttctccaccaacactttattttcaataaagtcaaacaccggcattgcataaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41381085 acattacgcacaacaaaacgaaggattttacttgatttgaaattcaatttctccaccaacactttattttcaataaagtcaaacaccggcattgcataaa 41381184  T
Q  107 tctacaccaacaa 119  Q
    |||||||||||||    
T  41381185 tctacaccaacaa 41381197  T

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Target: chr6 (Bit Score: 73; Significance: 8e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 7970637 - 7970749
Alignment:
Q  7 acattacgcacaacaaaacgaaggattttacttgatttgaaattcaatttctccaccaacactttattttcaataaagtcaaacaccggcattgcataaa 106  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||| |||    
T  7970637 acattacgcacaataaaacgaagcattttacttgatttgaaattcagtttctccaccaaccacttattttcaatcaagtcaaacactggcattgcaaaaa 7970736  T
Q  107 tctacaccaacaa 119  Q
     ||||||||||||    
T  7970737 cctacaccaacaa 7970749  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 8043072 - 8042960
Alignment:
Q  7 acattacgcacaacaaaacgaaggattttacttgatttgaaattcaatttctccaccaacactttattttcaataaagtcaaacaccggcattgcataaa 106  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||   ||||||||||| ||||||||||| ||||| ||| |||    
T  8043072 acattacgcacaacaaaacgaagcattttacttgatttgaaattcagtttctccaccaaccacttattttcaatcaagtcaaacactggcatcgcaaaaa 8042973  T
Q  107 tctacaccaacaa 119  Q
     ||||| ||||||    
T  8042972 cctacatcaacaa 8042960  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 8033088 - 8032989
Alignment:
Q  10 ttacgcacaacaaaacgaaggattttacttgatttgaaattcaatttctccaccaacactttattttcaataaagtcaaacaccggcattgcataaatct 109  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||| ||   |  |||||| | ||||||||||||||||||| ||||||    
T  8033088 ttacgcgcaacaaaacggaggattttacttggtttgaaattcaatttcttcaccaaaac---accttcaatcatgtcaaacaccggcattgcaaaaatct 8032992  T

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Target: scaffold0531 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 2017 - 2116
Alignment:
Q  10 ttacgcacaacaaaacgaaggattttacttgatttgaaattcaatttctccaccaacactttattttcaataaagtcaaacaccggcattgcataaatct 109  Q
    |||||||||||||| || |||||   ||||| ||||||||||||||||| |||||| ||   |  |||||| | ||||||||||||||||||| ||||||    
T  2017 ttacgcacaacaaagcgtaggatggcacttggtttgaaattcaatttcttcaccaaaac---accttcaatcatgtcaaacaccggcattgcaaaaatct 2113  T

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