View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686-Insertion-4 (Length: 817)
Name: NF4686-Insertion-4
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 689; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 8 - 817
Target Start/End: Complemental strand, 45200847 - 45200041
Alignment:
| Q |
8 |
gctgttgacctcgtaagtttttctactttgtgaatgttttgattgacggtgaagcgtagcattagaatcacgatgagtcattgtgattttggtaaaagcc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45200847 |
gctgttgacctcgtaagtttttctactttgtgaatgttttgattgacggtgaagcgtagctttagaatcacgatgagtcattgtgattttggtaaaagcc |
45200748 |
T |
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| Q |
108 |
atacatagcttcaacaaaatcatgatgtcaccgtgattttgacaaactcacagtttgttacattttattttttacaatctatgaataacagacattgaca |
207 |
Q |
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|||| |||||||||||||||||| ||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45200747 |
atacttagcttcaacaaaatcataatgtcactgtgattttgaaaaactcaccgtttgttacattttatttgttacaatctatgaataacagacattgaca |
45200648 |
T |
|
| Q |
208 |
tgtcgacaacaataatcaattgtcggtgtggtgttgatgtccgacactaagatgtgttggacaccatacatgcatttgatcagaagtgtcgatgctacaa |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
45200647 |
tgtcgacaacaataatcatttgtcggtgtggtgttgatgtccgacactgagatgtgttggacaccatacatacattcgatcagaagtgtcgatgctacaa |
45200548 |
T |
|
| Q |
308 |
atgttataagttatatattcattcatttttgttgttattaaaaagcaatgtggttgatttgcaggagagaatccctgttgatgaagtgtttcgagaattg |
407 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45200547 |
atgttataagttatat--tcattcatttttgttgttattaaaaagcaatgtggttgatttgcaggagagaatccctgttgatgaagtgtttcgagaattg |
45200450 |
T |
|
| Q |
408 |
aattgtactaaagaaggtctcactaatgatgaaggccaaaagagattggaagtttttggaccaaacaaattggaagaaaagaaggtaatcatcaatccat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45200449 |
aattgtactaaagaaggtctcactaatgatgaaggccaaaagagattggaagtttttggaccaaacaaattggaagaaaagaaggtaatcatcaatccat |
45200350 |
T |
|
| Q |
508 |
catgcaactaatctataattgcatttttacaaaatttcttaattcataacaatgactaatcttaattaatttgcactcaaacaggaaagcagattcctga |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45200349 |
catgcaactaatctataattgcatttttacaaaatttcttaattcataacaatgactaatcttaattaatttgcactcaaacaggaaagcaaattcctga |
45200250 |
T |
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| Q |
608 |
aattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggtacgttcttcatatga |
707 |
Q |
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| T |
45200249 |
aattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggtacgttcttcatatga |
45200150 |
T |
|
| Q |
708 |
ttaggctattacatggctattgttatatttgatttgcttatgnnnnnnnnnnnnnnnnnnnactgtctcgtcacttgtaacatacagggggaaccaccag |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45200149 |
ttaggctattacatggctattgttatatttgatttgcttatg-tttttttgcttgttttttactgtctcgtcacttgtaacatacagggggaaccaccag |
45200051 |
T |
|
| Q |
808 |
attggcagga |
817 |
Q |
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|||||||||| |
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| T |
45200050 |
attggcagga |
45200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 613 - 693
Target Start/End: Complemental strand, 21983275 - 21983195
Alignment:
| Q |
613 |
ttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggta |
693 |
Q |
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||||| |||||||||||||| | |||||||||||||| || ||||| |||||||| |||| |||||| |||||||||||| |
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| T |
21983275 |
ttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatggaggggta |
21983195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 695
Target Start/End: Original strand, 3151607 - 3151689
Alignment:
| Q |
613 |
ttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggtacg |
695 |
Q |
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||||| |||||||||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| |||||||| ||||| |
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| T |
3151607 |
ttgggatttatgtggaatcctctttcatgggtgatggaagctgcagcaatcatggctattgctttggccaatggaggagtacg |
3151689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 23585733 - 23585692
Alignment:
| Q |
116 |
cttcaacaaaatcatgatgtcaccgtgattttgacaaactca |
157 |
Q |
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| T |
23585733 |
cttcaacaaaatcatgttgtcactgtgattttgtcaaactca |
23585692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 27870946 - 27870987
Alignment:
| Q |
117 |
ttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
158 |
Q |
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| T |
27870946 |
ttcaacaaaatcatggtgtcaccgtgattttatcaaactcac |
27870987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 613 - 687
Target Start/End: Complemental strand, 1499371 - 1499297
Alignment:
| Q |
613 |
ttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgga |
687 |
Q |
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| T |
1499371 |
ttgggttttatgtggaatcctttatcatgggttatggaagctgctgctatcatggccattgctttggctaatgga |
1499297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 686
Target Start/End: Original strand, 1459378 - 1459445
Alignment:
| Q |
619 |
tttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgg |
686 |
Q |
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| T |
1459378 |
tttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
1459445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 605 - 692
Target Start/End: Original strand, 44529646 - 44529733
Alignment:
| Q |
605 |
tgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggt |
692 |
Q |
| |
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||||||| |||| |||||||||||||| || || ||||| ||||| || |||||||| |||||||||||| | |||||||||||||| |
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| T |
44529646 |
tgaaatttctgggatttatgtggaatcctctttcttgggttatggaggcagctgctataatggctattgcacttgcaaatggaggggt |
44529733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 693
Target Start/End: Complemental strand, 48439849 - 48439763
Alignment:
| Q |
607 |
aaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggta |
693 |
Q |
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| T |
48439849 |
aaattcttgggtttcatgtggaatccactatcatgggttatggaggttgctgcccttatggccattggattggcaaatggaggggta |
48439763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 619 - 689
Target Start/End: Complemental strand, 975676 - 975606
Alignment:
| Q |
619 |
tttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggagg |
689 |
Q |
| |
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|||||||||||||| | |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
975676 |
tttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggcacatggagg |
975606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 605 - 686
Target Start/End: Original strand, 26787234 - 26787315
Alignment:
| Q |
605 |
tgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgg |
686 |
Q |
| |
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||||||| ||||| ||||||||||| || | |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |
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| T |
26787234 |
tgaaatttttgggttttatgtggaaccctttatcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
26787315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 605 - 686
Target Start/End: Original strand, 50273350 - 50273431
Alignment:
| Q |
605 |
tgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgg |
686 |
Q |
| |
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|||| ||||| || |||||||||||||| | |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |
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| T |
50273350 |
tgaagttcttaggatttatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
50273431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 7873108 - 7873062
Alignment:
| Q |
112 |
atagcttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
158 |
Q |
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|||||||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
7873108 |
atagcttcaacaaaatcatggtgtcaccgtaattttatcaaactcac |
7873062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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