View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686-Insertion-5 (Length: 718)
Name: NF4686-Insertion-5
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686-Insertion-5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 718
Target Start/End: Complemental strand, 6971990 - 6971280
Alignment:
| Q |
8 |
gaatgttggatcaatattgaacaattataattttaaacttggtatattaaattttcgaaaataaaataaaatctacgtatttttgaaatgtttgatgtaa |
107 |
Q |
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||||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971990 |
gaatgttagatcaatatgtaacaattttaattttaaacttggtatatcaaattttcgaaaataaaataaaatctacgtatttttgaaatgtttgatgtaa |
6971891 |
T |
|
| Q |
108 |
atctaacaatcggcaatacatgactgtgtgagtgcagggatatcctaattgcaccgaatacattttcctcgatttttcaataccttaagtttttctccca |
207 |
Q |
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| T |
6971890 |
atctaacaatcggcaatacatgactgtgtgagtgtagggataccccaattgcaccgaatacgttttcctcgatttttcaataccttaagtttttctccca |
6971791 |
T |
|
| Q |
208 |
tgaatgcaggggaaacaaggtgacgttggtgattccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaaccttgttgttgctg |
307 |
Q |
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| T |
6971790 |
tgaatgcaggggaaacaatgtgacgttggtgattccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaaccttgttgttgttg |
6971691 |
T |
|
| Q |
308 |
caatgatttcccagatactgtactatactttgaaagaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccattccaatatatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971690 |
caatgatttcccagatactgtactatactttgaaagaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccattccaatatatg |
6971591 |
T |
|
| Q |
408 |
aatctctttcctgcaaaatcccattaataataatataatttgaaatcattatttaatacatgcacacaatctctctccctctctatggggccatatttat |
507 |
Q |
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| T |
6971590 |
aatctctttcctgcaaaatcccattaataataatataatttgaaatcattatttaatacatgcacacaatctctctccctctctatggggccatatttat |
6971491 |
T |
|
| Q |
508 |
aagcactaatataaaaaacatcattctaatataaagtttaggtgagttggattttcagggctcgtcaaaattagagctgacctcaagatttaaagactgt |
607 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
6971490 |
aagcactaatataaaaaatatcattctaatataaagtttaggtgagttggattttcaggactcatcaaaatcagagctgacctcaagatttaaagactgt |
6971391 |
T |
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| Q |
608 |
ttatagagatttttactgatcacccaccaaatattaatatataattgtatctatagggcgttagtaaataaatttatcctccacacaactctctctacaa |
707 |
Q |
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| T |
6971390 |
ttatagaggtttttactaatcacccaccaaatattaatatataattgtatctatagggcgttagtaaataaatttatcctccacacaactctctctacaa |
6971291 |
T |
|
| Q |
708 |
gtctcccttga |
718 |
Q |
| |
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||||||||||| |
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| T |
6971290 |
gtctcccttga |
6971280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 204 - 419
Target Start/End: Complemental strand, 1266686 - 1266471
Alignment:
| Q |
204 |
cccatgaatgcaggggaaacaaggtgacgttggtgattccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaaccttgttgtt |
303 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| || | |||| |||||| ||||| || ||||| |||| || |
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| T |
1266686 |
cccatgaatgcaggggcaacaatgtgacgttggtgataccaattttcaccatttgccatcaatactccttctccaatgaaatgttttgaaccctgttttt |
1266587 |
T |
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| Q |
304 |
gctgcaatgatttcccagatactgtactatactttgaaagaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccattccaata |
403 |
Q |
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| | |||||||||||||||||||||| || |||||||||||||| || |||||| ||| ||||| | |||| |||||||||| ||||||||||| |
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| T |
1266586 |
gtaaccatgatttcccagatactgtactgtattttgaaagaaactcttttatcaattcagtttctgtcaaacacaaccttggctctggaccattccaata |
1266487 |
T |
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| Q |
404 |
tatgaatctctttcct |
419 |
Q |
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| T |
1266486 |
tatatacctctttcct |
1266471 |
T |
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