View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686-Insertion-6 (Length: 693)
Name: NF4686-Insertion-6
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 6 - 693
Target Start/End: Complemental strand, 45512939 - 45512243
Alignment:
| Q |
6 |
cactcaagtcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgtcgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagta |
105 |
Q |
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| T |
45512939 |
cactcaagtcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgccgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagta |
45512840 |
T |
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| Q |
106 |
attgaagctgagatcaaggaattgtaggttcttgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaagg |
205 |
Q |
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| T |
45512839 |
attgaagctgagatcaaggaatcgtaggttcttgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaagg |
45512740 |
T |
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| Q |
206 |
cgtcccatggaacccaagaacataggaattggactcccactgaaattatttctagacaagtccaaataagtcaagtgttccaattgcaacaaagatgagc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512739 |
cgtcccatggaacccaagaacataggaattggactcccactgaaattatttccagacaagtccaaataagtcaagtgttccaattgcaacaaagatgagc |
45512640 |
T |
|
| Q |
306 |
tcacatttggagcaactattggtgaacaaggcatgtaatcgtccaaat---------agtagtgaccaaaatgttcttcttctcgcgaccaagatggttg |
396 |
Q |
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| T |
45512639 |
tcacatttggagcaactattggtgaacaaggcatgtaatcgtccaaattgtacaaatagtagtgaccaaaatgttcttcttctcgcgaccaaaatggttg |
45512540 |
T |
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| Q |
397 |
gtgacaaggattcatgagatcaagtttgacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaa |
496 |
Q |
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| T |
45512539 |
gtgacaaggattcatgagatcaagtttgacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaa |
45512440 |
T |
|
| Q |
497 |
agcttgtttggtgaatcatgtgcaatggatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagcata |
596 |
Q |
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| T |
45512439 |
agcttgtttggtgaatcatgtgcaatggatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagcata |
45512340 |
T |
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| Q |
597 |
tttgtgcaatttcaatcaacaccaaaagtactacacatttgtaatatcttcccatgttttctatctctgtttctattgaaataattgaatgatggtt |
693 |
Q |
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| T |
45512339 |
tttgtgcaatttcaatcaacaccaaaagtactacacatttgtaatatcttcccatgttttctatctctgtttctattgaaataattgaatgatggtt |
45512243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 22848797 - 22848928
Alignment:
| Q |
183 |
gagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttctagacaagtccaaataagtcaagtg |
282 |
Q |
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|||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||| ||||| || |||||||||||||||||||| |
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| T |
22848797 |
gagagagagagagatactcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagta |
22848896 |
T |
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| Q |
283 |
ttccaattgcaacaaagatgagctcacatttg |
314 |
Q |
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| T |
22848897 |
ttccaagtgcaacaaagatgagctcagatttg |
22848928 |
T |
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