View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686-Insertion-7 (Length: 670)

Name: NF4686-Insertion-7
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686-Insertion-7
NF4686-Insertion-7
[»] chr6 (15 HSPs)
chr6 (7-230)||(29728429-29728652)
chr6 (7-330)||(29759925-29760248)
chr6 (7-190)||(29792381-29792564)
chr6 (6-192)||(28491019-28491205)
chr6 (6-192)||(29803429-29803615)
chr6 (7-190)||(28479926-28480110)
chr6 (100-382)||(29724885-29725168)
chr6 (562-647)||(29728843-29728928)
chr6 (14-187)||(29695950-29696123)
chr6 (14-190)||(29674567-29674743)
chr6 (488-556)||(29728733-29728801)
chr6 (571-640)||(29760328-29760398)
chr6 (192-239)||(28491231-28491278)
chr6 (192-239)||(29803641-29803688)
chr6 (7-65)||(29724806-29724864)
[»] scaffold0012 (3 HSPs)
scaffold0012 (7-364)||(212603-212960)
scaffold0012 (14-175)||(239302-239463)
scaffold0012 (585-647)||(213255-213317)
[»] chr8 (1 HSPs)
chr8 (7-192)||(12589205-12589390)
[»] chr3 (1 HSPs)
chr3 (7-195)||(614230-614418)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 29728429 - 29728652
Alignment:
7 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatattt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
29728429 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgcaacaggttctatattt 29728528  T
107 cctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtgcatatattaggcttaa 206  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
29728529 cctaaaactttttcaacaatctccccaataaacttatgctcaggcatatccctgtccaatatgagaaaagaggtcattcaagtgcatatattaggattaa 29728628  T
207 ttgtgtttttcatcctctatctac 230  Q
    ||||||||||||||||||||||||    
29728629 ttgtgtttttcatcctctatctac 29728652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 29759925 - 29760248
Alignment:
7 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatattt 106  Q
    |||||| ||||||| ||||||||||||| ||| |||||||||||||||||||| ||||| |  |||||||||||| || || | || |||||||||||||    
29759925 atcatctgacccaatattcaaaagggaagtcagatgttgcttttggtgctccagtccaattaggtaatcaccaaccggtaaggcaagaggttctatattt 29760024  T
107 cctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtgcatatattaggcttaa 206  Q
    |||||||||| ||||||||| |||||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
29760025 cctaagacttgttcaacaatgtccccaataaacatatgctcaggcgtatccctgtccaatatgagaaaagaggtcattcaagtgcatatattatgcttaa 29760124  T
207 ttgtgtttttcatcctctatctaccgtgattgtacaatttcagtccccatttattaacgagtttttcccgcttatgttttccccgtgatttagtagtctc 306  Q
    ||||||||||||||||  || || ||  | ||| |||||| |||||| |||  || | |  |||| |||  ||||||||| | | || ||| ||||||||    
29760125 ttgtgtttttcatccttcatatatcgcaactgtgcaattttagtccctattattttaggtcttttgccccgttatgtttttctcatggtttcgtagtctc 29760224  T
307 cctcccaaaatttacactgatgtg 330  Q
    |||||||||| | |||||||||||    
29760225 cctcccaaaagtaacactgatgtg 29760248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 29792381 - 29792564
Alignment:
7 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatattt 106  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||||| | |||||||  ||||||||||||||| ||   || ||||| |||||||    
29792381 atcatcagacccaacattcaaaagcgaagtcacatgttgcttttggtgctctagtccaactaggtaatcaccaacaggtaagacaataggttttatattt 29792480  T
107 cctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtg 190  Q
    | |||||||| ||||||||| | | ||||||| |  | ||||  | ||||||||||||||| |||||||| |||||||||||||    
29792481 cttaagacttgttcaacaatattctcaataaactcgtactcatacttatccctatccaataagagaaaagtggtcattcaagtg 29792564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 28491019 - 28491205
Alignment:
6 catcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatatt 105  Q
    ||||||| || |||||||||||||| ||| |||| ||||||||||||||||||| |||||||  ||| ||||||| ||| || | ||| |||| ||||||    
28491019 catcatcagatccaacattcaaaagtgaagtcacgtgttgcttttggtgctccagtccaactaggtagtcaccaataggtaaggcaacgggttttatatt 28491118  T
106 tcctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtgca 192  Q
    || |||||||| ||||||||||| ||||||||| |  ||||||  |  |||||||||||||| |||||||  ||||||| |||||||    
28491119 tcttaagacttgttcaacaatcttcccaataaactcgtgctcatacccatccctatccaataagagaaaattggtcatttaagtgca 28491205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 29803429 - 29803615
Alignment:
6 catcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatatt 105  Q
    ||||||| || |||||||||||||| ||| |||| ||||||||||||||||||| |||||||  ||| ||||||| ||| || | ||| |||| ||||||    
29803429 catcatcagatccaacattcaaaagtgaagtcacgtgttgcttttggtgctccagtccaactaggtagtcaccaataggtaaggcaacgggttttatatt 29803528  T
106 tcctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtgca 192  Q
    || |||||||| ||||||||||| ||||||||| |  ||||||  |  |||||||||||||| |||||||  ||||||| |||||||    
29803529 tcttaagacttgttcaacaatcttcccaataaactcgtgctcatacccatccctatccaataagagaaaattggtcatttaagtgca 29803615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 28479926 - 28480110
Alignment:
7 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaa-tgaaacaggttctatatt 105  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||||| | |||||||  ||||||||||||||| ||   ||  ||||| ||||||    
28479926 atcatcagacccaacattcaaaagcgaagtcacatgttgcttttggtgctctagtccaactaggtaatcaccaacaggtaagacaattaggttttatatt 28480025  T
106 tcctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtg 190  Q
    || |||||||| ||||||||| | | ||||||| |  | ||||  | ||||||||||||||| |||||||| |||||||||||||    
28480026 tcttaagacttgttcaacaatattctcaataaactcgtactcatacttatccctatccaataagagaaaagtggtcattcaagtg 28480110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 100 - 382
Target Start/End: Original strand, 29724885 - 29725168
Alignment:
100 tatatttcctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctat-ccaatatgagaaaagaggtcattcaagtgcatatatt 198  Q
    ||||||||||| ||  | |||||||||||| ||||||||||||||||||  | ||||||||| |||||| ||||||||| || |||||| ||| ||||||    
29724885 tatatttcctatgatatgttcaacaatctctccaataaatttatgctcaaacttatccctattccaataagagaaaagatgttattcaaatgcttatatt 29724984  T
199 aggcttaattgtgtttttcatcctctatctaccgtgattgtacaatttcagtccccatttatt-aacgagtttttcccgcttatgttttccccgtgattt 297  Q
    ||||||||||||||||||||||||| || || || ||||||     || ||||||||||| || || || |||| ||| |||||||||||  | ||||||    
29724985 aggcttaattgtgtttttcatcctccatatatcgcgattgtgtggctttagtccccattttttgaaggaattttgccc-cttatgttttcatcatgattt 29725083  T
298 agtagtctccctcccaaaatttacactgatgtgatatcattaactgatataacatttaactctcataaccgtgtgatttttcttt 382  Q
      |||||||| |||||||| ||||  |||| ||| || ||| | |||| ||| | | |||||| |||| | ||||||||||||||    
29725084 gatagtctccttcccaaaacttaccttgatttgacattatttattgatgtaatagtcaactcttataaacatgtgatttttcttt 29725168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 562 - 647
Target Start/End: Original strand, 29728843 - 29728928
Alignment:
562 aaatcgttcaaattatgctatgatttgtttgtcgtttgaggttttgaaaaatgaattaagaaatataattaccgtagatgttttaa 647  Q
    |||||| ||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
29728843 aaatcgctcaaattgtgctatgctttgtttgttgtttgagattttgaaaaatgaattaagaaatataattaccatagatgttttaa 29728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 29695950 - 29696123
Alignment:
14 gacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatatttcctaaga 113  Q
    ||||||||||||||||| ||| |||||||||||||||||||||| | |||||||  | |||||||| |||| ||   || ||||| |||||||| |||||    
29695950 gacccaacattcaaaagcgaagtcacatgttgcttttggtgctctagtccaactaggcaatcaccagcaggtaagacaataggttttatatttcttaaga 29696049  T
114 ctttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaa 187  Q
    ||| ||||| ||||| | ||||||| | || ||||  |  |||||||||||||| |||||||| |||| |||||    
29696050 cttgttcaataatcttctcaataaactcatactcatactcatccctatccaataagagaaaagtggtcgttcaa 29696123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 29674567 - 29674743
Alignment:
14 gacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatatttcctaaga 113  Q
    |||||||||||||||||  || |||| ||||||||||||||||||| ||||||   | | |||||| |||| || | |||||||| |||||||| |||||    
29674567 gacccaacattcaaaagcaaagtcacgtgttgcttttggtgctccactccaacaaggaagtcaccagcaggtaaggcaacaggttttatatttcttaaga 29674666  T
114 ctttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtg 190  Q
    ||| ||||||||||| | ||||||| | |||| ||  |  |||||| ||||||| ||||||| || |||||||||||    
29674667 cttcttcaacaatcttctcaataaactcatgcacatacccatccctgtccaataagagaaaatagttcattcaagtg 29674743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 488 - 556
Target Start/End: Original strand, 29728733 - 29728801
Alignment:
488 aaggaaagtcattaattgagtgtcaggttaataaatgatgtcacaataatatatatttggatgaaactg 556  Q
    ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
29728733 aaggaaaatcattaattgagtgttaagttaataaatgatgtcacaataatatatatttggatgaaactg 29728801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 640
Target Start/End: Original strand, 29760328 - 29760398
Alignment:
571 aaattatgctatgatttgtttgtcgtttgaggtttt-gaaaaatgaattaagaaatataattaccgtagat 640  Q
    ||||| ||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||    
29760328 aaattgtgctatgctttgtttgtcgtttgaggtttttggaaaatgaattaagaaatataattaacgtagat 29760398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 28491231 - 28491278
Alignment:
192 atatattaggcttaattgtgtttttcatcctctatctaccgtgattgt 239  Q
    ||||||||||||||||||||||||||  |||| ||||| |||||||||    
28491231 atatattaggcttaattgtgtttttcgccctccatctatcgtgattgt 28491278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 29803641 - 29803688
Alignment:
192 atatattaggcttaattgtgtttttcatcctctatctaccgtgattgt 239  Q
    ||||||||||||||||||||||||||  |||| ||||| |||||||||    
29803641 atatattaggcttaattgtgtttttcgccctccatctatcgtgattgt 29803688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 29724806 - 29724864
Alignment:
7 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaa 65  Q
    |||||| ||||||| |||||||||| || | |||||||||||||| ||||||| |||||    
29724806 atcatcagacccaagattcaaaaggaaagttacatgttgcttttgctgctccagtccaa 29724864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 182; Significance: 5e-98; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 7 - 364
Target Start/End: Original strand, 212603 - 212960
Alignment:
7 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatattt 106  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||  ||||||||||||| | || |||||| ||| |||| ||    
212603 atcatctgacccaaaattcaaaagggaagtcacatgttgcttttggtgatccagtccaactaggtaatcaccaacatgtaaggaaacaagttttataatt 212702  T
107 cctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtgcatatattaggcttaa 206  Q
    || || |||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
212703 cccaatacttgttcaacaatctccccaataaacttatgctcaggcatatccctgtccaacatgagaaaagaggtcattcgagtgcatatattaggcttaa 212802  T
207 ttgtgtttttcatcctctatctaccgtgattgtacaatttcagtccccatttattaacgagtttttcccgcttatgttttccccgtgatttagtagtctc 306  Q
    ||||||||| ||||| | ||||||||||||||| |||||| ||||||||||| || | || | || ||    |||||||||||| |||||| ||||||||    
212803 ttgtgttttgcatcccccatctaccgtgattgtgcaattttagtccccatttttttaggaatcttgcctctgtatgttttccccatgatttcgtagtctc 212902  T
307 cctcccaaaatttacactgatgtgatatcattaactgatataacatttaactctcata 364  Q
    ||||| ||||||| ||||||||||| |||||| | |||| ||||||| ||||||||||    
212903 cctccaaaaatttgcactgatgtgacatcatttattgatgtaacattcaactctcata 212960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 239302 - 239463
Alignment:
14 gacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatatttcctaaga 113  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||| |||||||  |||||||| || ||| || | |||||||| ||||||| ||||||    
239302 gacctaacattcaaaagagaagtcacatgttgcttttggtgctccagtccaactgggtaatcacaaataggtaaggcaacaggttttatattttctaaga 239401  T
114 ctttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaa 175  Q
    ||| || || ||||||| ||||||| |||||||||||||||||||| ||||||| |||||||    
239402 cttgtttaataatctcctcaataaacttatgctcaggcatatccctgtccaataagagaaaa 239463  T

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Target: scaffold0012; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 647
Target Start/End: Original strand, 213255 - 213317
Alignment:
585 tttgtttgtcgtttgaggttttgaaaaatgaattaagaaatataattaccgtagatgttttaa 647  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||    
213255 tttgtttgtcgtttgaggtttcgtaaaatgaattaagaaatataattactgtagattttttaa 213317  T

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Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 12589390 - 12589205
Alignment:
7 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatattt 106  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||  ||||||||||||||| |||| ||| |||| | |||||    
12589390 atcatcagacccaacattcaaaagcgaagtcacatgttgcttttggtgctccagtccaactaggtaatcaccaacaggtaatgcaacgggttttgtattt 12589291  T
107 cctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtgca 192  Q
    | ||||| || |||||||||||  |||||||| | ||||||   |  |||||||||||||| ||||||||  ||||||||||||||    
12589290 cttaagatttgttcaacaatctttccaataaactcatgctcgtacccatccctatccaataagagaaaagtagtcattcaagtgca 12589205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 614418 - 614230
Alignment:
7 atcatccgacccaacattcaaaagggaaatcacatgttgcttttggtgctccaatccaactttgtaatcaccaacaggcaatgaaacaggttctatattt 106  Q
    |||||| ||||||| ||||||||| ||| |||| ||||||||||||||||||| |||||||  ||| ||||||||| | || |||||||||| |||||||    
614418 atcatcagacccaatattcaaaagtgaagtcacgtgttgcttttggtgctccagtccaactaggtactcaccaacaagtaaggaaacaggttttatattt 614319  T
107 cctaagactttttcaacaatctccccaataaatttatgctcaggcatatccctatccaatatgagaaaagaggtcattcaagtgcatat 195  Q
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614318 cttaagacttgttcaacaatcttctcaataaactcatactcatacgcatccctgtccaataagagataagaggtcattcaagtgcatat 614230  T

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