View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686_high_11 (Length: 422)

Name: NF4686_high_11
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686_high_11
NF4686_high_11
[»] chr5 (17 HSPs)
chr5 (31-410)||(38169258-38169633)
chr5 (31-410)||(38197471-38197846)
chr5 (31-285)||(38453425-38453671)
chr5 (223-410)||(38187978-38188164)
chr5 (223-410)||(38210193-38210379)
chr5 (243-410)||(38182967-38183133)
chr5 (243-410)||(38215224-38215389)
chr5 (31-183)||(38187851-38187997)
chr5 (31-183)||(38210360-38210506)
chr5 (305-410)||(38183208-38183313)
chr5 (305-410)||(38215044-38215149)
chr5 (294-410)||(38443102-38443218)
chr5 (216-410)||(38185239-38185422)
chr5 (216-410)||(38212935-38213118)
chr5 (336-408)||(38453279-38453349)
chr5 (92-131)||(38185214-38185253)
chr5 (92-131)||(38213104-38213143)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 31 - 410
Target Start/End: Original strand, 38169258 - 38169633
Alignment:
Q  31 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttgggaaattcagttaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38169258 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttgggaaattcagttaa 38169357  T
Q  131 tccaactatatatattgccttacgtgaatcatatagttaatcaaatacttat---aggataagtctgtggtattaattctagtacttaggaaattcagtt 227  Q
    ||||||    ||||||||||||||||||||  | ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  38169358 tccaac----tatattgccttacgtgaatc--acagttaatcaaatacttataggaggataagtctgtggtattaattctagtacttaggaaattcagtt 38169451  T
Q  228 aatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccctctttt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||| | |||||||||||     
T  38169452 aatcaaatacttataaatactgaactgctcacaattcacatattcacatcatatagtt-aaaaaacacagtttcacccgtcttttctcgaaccctcttta 38169550  T
Q  328 cactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaaccta 410  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38169551 cactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta 38169633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 31 - 410
Target Start/End: Complemental strand, 38197846 - 38197471
Alignment:
Q  31 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttgggaaattcagttaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38197846 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttgggaaattcagttaa 38197747  T
Q  131 tccaactatatatattgccttacgtgaatcatatagttaatcaaatacttat---aggataagtctgtggtattaattctagtacttaggaaattcagtt 227  Q
    |||||||    |||||||||||||||||||  | ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  38197746 tccaact----atattgccttacgtgaatc--acagttaatcaaatacttataggaggataagtctgtggtattaattctagtacttaggaaattcagtt 38197653  T
Q  228 aatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccctctttt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||| | |||||||||||     
T  38197652 aatcaaatacttataaatactgaactgctcacaattcacatattcacatcatatagtt-aaaaaacacagtttcacccgtcttttctcgaaccctcttta 38197554  T
Q  328 cactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaaccta 410  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38197553 cactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta 38197471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 31 - 285
Target Start/End: Complemental strand, 38453671 - 38453425
Alignment:
Q  31 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttgggaaattcagttaa 130  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38453671 tagaattcacgtaaatttgataagttatatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttgggaaattcagttaa 38453572  T
Q  131 tccaactatatatattgccttacgtgaatcatatagttaatcaaatacttataggataagtctgtggtattaattctagtacttaggaaattcagttaat 230  Q
    |||||||    ||||||||| |||||||||  |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  38453571 tccaact----atattgcctaacgtgaatc--atagttaatcaaatacttataggatatgtc--tggtattaattctagtacttaggaaattcagttaat 38453480  T
Q  231 caaatacttataaatactgaactgctcacaattcacatattcacatcacatagtt 285  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38453479 caaatacttataaatactgaactgctcacaattcccatattcacatcacatagtt 38453425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 223 - 410
Target Start/End: Original strand, 38187978 - 38188164
Alignment:
Q  223 cagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccct 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||    
T  38187978 cagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttaaaaaa-cacagtttcacccgtcttttctcgaaccct 38188076  T
Q  323 cttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaaccta 410  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38188077 cttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta 38188164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 223 - 410
Target Start/End: Complemental strand, 38210379 - 38210193
Alignment:
Q  223 cagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccct 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||    
T  38210379 cagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttaaaaaa-cacagtttcacccgtcttttctcgaaccct 38210281  T
Q  323 cttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaaccta 410  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38210280 cttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta 38210193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 243 - 410
Target Start/End: Complemental strand, 38183133 - 38182967
Alignment:
Q  243 aatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccctcttttcactctcagtaccct 342  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  38183133 aatactgaactgctcacaattcacatattcacatcacatagttaaaaaa-cacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccct 38183035  T
Q  343 ctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaaccta 410  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38183034 ctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta 38182967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 243 - 410
Target Start/End: Original strand, 38215224 - 38215389
Alignment:
Q  243 aatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccctcttttcactctcagtaccct 342  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  38215224 aatactgaactgctcacaattcacatattcacatcacatagttaaaaaa-cacagtttcacccgtcttttcttgaaccctcttttcactctcagtaccct 38215322  T
Q  343 ctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaaccta 410  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  38215323 ctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtgg-aaaatccaaccta 38215389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 38187851 - 38187997
Alignment:
Q  31 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttgggaaattcagttaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38187851 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttaggaaattcagttaa 38187950  T
Q  131 tccaactatatatattgccttacgtgaatcatatagttaatcaaatacttata 183  Q
    ||||||    ||||||||||||||||||||  | |||||||||||||||||||    
T  38187951 tccaac----tatattgccttacgtgaatc--acagttaatcaaatacttata 38187997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 38210506 - 38210360
Alignment:
Q  31 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttgggaaattcagttaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38210506 tagaattcacgtaaatttgataagttacatggcttatataagttaatccaatacatatatattctctctgattcccctagtttttaggaaattcagttaa 38210407  T
Q  131 tccaactatatatattgccttacgtgaatcatatagttaatcaaatacttata 183  Q
    |||||||    |||||||||||||||||||  | |||||||||||||||||||    
T  38210406 tccaact----atattgccttacgtgaatc--acagttaatcaaatacttata 38210360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 305 - 410
Target Start/End: Original strand, 38183208 - 38183313
Alignment:
Q  305 cgtcttttttggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatcc 404  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38183208 cgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatcc 38183307  T
Q  405 aaccta 410  Q
    ||||||    
T  38183308 aaccta 38183313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 305 - 410
Target Start/End: Complemental strand, 38215149 - 38215044
Alignment:
Q  305 cgtcttttttggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatcc 404  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38215149 cgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatcc 38215050  T
Q  405 aaccta 410  Q
    ||||||    
T  38215049 aaccta 38215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 38443102 - 38443218
Alignment:
Q  294 acagtttcacccgtcttttttggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatgg 393  Q
    ||||||||| ||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  38443102 acagtttcatccgtcttttctcgaaccctcttttcattctcaataccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacttatgg 38443201  T
Q  394 tggaaaaatccaaccta 410  Q
    |||| ||||||||||||    
T  38443202 tggagaaatccaaccta 38443218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 410
Target Start/End: Original strand, 38185239 - 38185422
Alignment:
Q  216 ggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcaca--tcacatagttnnnnnnncacagtttcacccgtcttttt 313  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||||  || ||             || ||||||  ||||||||     
T  38185239 ggaaattcagttaattaaatacttataaatattggactgctcacaattcacgtattcacacgtccca-------------actgtttcagacgtcttttc 38185325  T
Q  314 tggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaaccta 410  Q
    | ||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  38185326 tcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattacctatggtgcaaaaatccaaccta 38185422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 410
Target Start/End: Complemental strand, 38213118 - 38212935
Alignment:
Q  216 ggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcaca--tcacatagttnnnnnnncacagtttcacccgtcttttt 313  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||||  || ||             || ||||||  ||||||||     
T  38213118 ggaaattcagttaattaaatacttataaatattggactgctcacaattcacgtattcacacgtccca-------------actgtttcagacgtcttttc 38213032  T
Q  314 tggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaaccta 410  Q
    | ||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  38213031 tcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattacctatggtgcaaaaatccaaccta 38212935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 38453349 - 38453279
Alignment:
Q  336 gtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaacc 408  Q
    |||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  38453349 gtaccctctcaaaac--tttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacc 38453279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 38185214 - 38185253
Alignment:
Q  92 ttctctctgattcccctagtttttgggaaattcagttaat 131  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  38185214 ttctctctaattctcctagtttttgggaaattcagttaat 38185253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 38213143 - 38213104
Alignment:
Q  92 ttctctctgattcccctagtttttgggaaattcagttaat 131  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  38213143 ttctctctaattctcctagtttttgggaaattcagttaat 38213104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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