View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686_high_12 (Length: 404)

Name: NF4686_high_12
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686_high_12
NF4686_high_12
[»] chr1 (1 HSPs)
chr1 (18-395)||(36315085-36315465)
[»] chr8 (46 HSPs)
chr8 (170-395)||(19344454-19344679)
chr8 (169-395)||(19389897-19390123)
chr8 (170-336)||(19504652-19504818)
chr8 (170-379)||(19336766-19336975)
chr8 (172-394)||(19489443-19489664)
chr8 (164-351)||(19470107-19470294)
chr8 (164-351)||(19541031-19541218)
chr8 (164-351)||(19591480-19591667)
chr8 (169-354)||(19458413-19458598)
chr8 (169-354)||(19556091-19556276)
chr8 (164-367)||(19410120-19410323)
chr8 (164-367)||(19457139-19457342)
chr8 (164-367)||(19523736-19523939)
chr8 (170-367)||(19354801-19354995)
chr8 (177-367)||(19375930-19376120)
chr8 (170-345)||(19173419-19173597)
chr8 (276-395)||(19373462-19373581)
chr8 (172-367)||(19404064-19404256)
chr8 (172-367)||(19447846-19448041)
chr8 (172-367)||(19533035-19533230)
chr8 (18-82)||(19376236-19376300)
chr8 (18-74)||(19410434-19410490)
chr8 (18-74)||(19457453-19457509)
chr8 (169-213)||(19468341-19468385)
chr8 (18-74)||(19523569-19523625)
chr8 (20-134)||(19355043-19355151)
chr8 (19-74)||(19469938-19469993)
chr8 (19-74)||(19540862-19540917)
chr8 (19-74)||(19591781-19591836)
chr8 (20-82)||(19337069-19337131)
chr8 (33-134)||(19344742-19344837)
chr8 (18-80)||(19448135-19448197)
chr8 (18-80)||(19532879-19532941)
chr8 (18-134)||(19468998-19469108)
chr8 (33-80)||(19185068-19185115)
chr8 (19-74)||(19287338-19287393)
chr8 (18-80)||(19555919-19555981)
chr8 (18-134)||(19173246-19173356)
chr8 (164-213)||(19469168-19469217)
chr8 (18-78)||(19390214-19390274)
chr8 (18-74)||(19489728-19489784)
chr8 (20-68)||(19504496-19504544)
chr8 (33-68)||(16004306-16004341)
chr8 (33-80)||(19458256-19458303)
chr8 (33-80)||(19468184-19468231)
chr8 (33-134)||(19404321-19404416)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 36315085 - 36315465
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatcttcttctaagtcaaaggggtgatttctatcataaaa 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  36315085 gtttcctatcttgacattctattttgagaacaccagagtaatctagtgataaaactgttgaatcttcttctgagtcaaagggatgatttctatcataaaa 36315184  T
Q  118 ccacactactgtgccattaacatctattacaatcaagtatcttctcaattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315185 ccacactactgtgccattaacatctattacaatcaagtatcttctcaattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaat 36315284  T
Q  218 gtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtggtactccaccacaaccataagtatatcaaaataatttgtttcttta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36315285 gtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtagtactccaccacaaccataagtatatcaaaataatttgtttcttta 36315384  T
Q  318 ttctaaagcttatcatgatcaatg---aatattgtttcaaaacgaagagaaatgtactcaccaaacccgaaggagaataat 395  Q
    ||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36315385 ttctaaagcttatcatgatcaatgaataatattgtttcaaaaagaagagaaatgtactcatcaaacccgaaggagaataat 36315465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 170 - 395
Target Start/End: Complemental strand, 19344679 - 19344454
Alignment:
Q  170 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 269  Q
    |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||   ||||||    
T  19344679 agacaatacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgttagtag 19344580  T
Q  270 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgt 369  Q
      ||| ||||||||||||||||||||||||| | || ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  19344579 aagtaatccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaatattgtttcaaaaagaagagaaatat 19344480  T
Q  370 actcaccaaacccgaaggagaataat 395  Q
    ||| | | ||||||||||||||||||    
T  19344479 acttatcgaacccgaaggagaataat 19344454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 169 - 395
Target Start/End: Complemental strand, 19390123 - 19389897
Alignment:
Q  169 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 268  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||   |||||    
T  19390123 aagacaatacttgtcttgtttagaacgtagcttggaattggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgttagta 19390024  T
Q  269 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatg 368  Q
    |  ||| ||||||||||||||||||||||||| | || |||||||||||||  | |||||||||||||  ||||  |||||||||||| ||||||||||     
T  19390023 gaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcatagcttatcatgattgatgataattgtttcaaaaagaagagaaata 19389924  T
Q  369 tactcaccaaacccgaaggagaataat 395  Q
    ||||||| ||||||||| |||||||||    
T  19389923 tactcactaaacccgaacgagaataat 19389897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 170 - 336
Target Start/End: Original strand, 19504652 - 19504818
Alignment:
Q  170 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 269  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| || ||| ||||||||    
T  19504652 agacaatacttgtcttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatctttcgttgcattaccacaaatactagtag 19504751  T
Q  270 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgat 336  Q
    | ||||||||||||||||||||||||||||| | || |||||||||||||   || |||||||||||    
T  19504752 tagtactccaccacaaccataagtatatcaatacaacttgtttctttatttcgaaacttatcatgat 19504818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 170 - 379
Target Start/End: Complemental strand, 19336975 - 19336766
Alignment:
Q  170 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 269  Q
    |||||| |||| ||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||  ||||||| |||||| ||| | ||| ||    
T  19336975 agacaaaactttccttgttcagaacatagcttggatttggaatttaatgtatcacctggcttcaaactatcacttgttgctttaacacaaatattagcag 19336876  T
Q  270 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgt 369  Q
    | ||  ||||||||||||||||||||||| ||| ||||||||| ||| || ||||||||||||||||  |||||||||||||||||| |||||||||| |    
T  19336875 tagtgttccaccacaaccataagtatatccaaacaatttgtttatttcttttaaagcttatcatgattgatgaatattgtttcaaaaagaagagaaatat 19336776  T
Q  370 actcaccaaa 379  Q
    ||| ||||||    
T  19336775 acttaccaaa 19336766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 172 - 394
Target Start/End: Complemental strand, 19489664 - 19489443
Alignment:
Q  172 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 271  Q
    |||||||||||||||||| ||||||||| |||| ||| || | | ||||||||||||||||||||||||  |||||||||||||| ||| ||| |||||     
T  19489664 acaatacttgccttgtttggaacatagcttggatttgtaagtcactgtatcacctggcttcaaactatcacttgttgcattaacacaaatactcgtagta 19489565  T
Q  272 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgtac 371  Q
    ||| || |||||||||| ||| ||||||||| | | |||||||||||| ||||||||||||||||   ||| ||||||||||||| |||||||||| |||    
T  19489564 gtattc-accacaaccaaaagcatatcaaaacagtctgtttctttattttaaagcttatcatgattgctgagtattgtttcaaaatgaagagaaatatac 19489466  T
Q  372 tcaccaaacccgaaggagaataa 394  Q
    ||||||||||| |||||| ||||    
T  19489465 tcaccaaaccccaaggagtataa 19489443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 351
Target Start/End: Original strand, 19470107 - 19470294
Alignment:
Q  164 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 263  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19470107 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19470206  T
Q  264 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 351  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19470207 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19470294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 351
Target Start/End: Original strand, 19541031 - 19541218
Alignment:
Q  164 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 263  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19541031 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19541130  T
Q  264 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 351  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19541131 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19541218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 351
Target Start/End: Complemental strand, 19591667 - 19591480
Alignment:
Q  164 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 263  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19591667 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19591568  T
Q  264 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 351  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19591567 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19591480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 169 - 354
Target Start/End: Original strand, 19458413 - 19458598
Alignment:
Q  169 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 268  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | |||| | |||| ||| | ||| |    
T  19458413 aagacaaaacttgccttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatcacgttttgcttcaacacaaatattagca 19458512  T
Q  269 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaa 354  Q
    || ||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||||||  ||||||||||||||||    
T  19458513 gtagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaatattgtttcaa 19458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 169 - 354
Target Start/End: Original strand, 19556091 - 19556276
Alignment:
Q  169 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 268  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | |||| | |||| ||| | ||| |    
T  19556091 aagacaaaacttgccttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatcacgttttgcttcaacacaaatattagca 19556190  T
Q  269 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaa 354  Q
    || ||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||||||  ||||||||||||||||    
T  19556191 gtagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaatattgtttcaa 19556276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 164 - 367
Target Start/End: Complemental strand, 19410323 - 19410120
Alignment:
Q  164 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 263  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19410323 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19410224  T
Q  264 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 363  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19410223 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19410124  T
Q  364 aaat 367  Q
    ||||    
T  19410123 aaat 19410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 164 - 367
Target Start/End: Complemental strand, 19457342 - 19457139
Alignment:
Q  164 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 263  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19457342 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19457243  T
Q  264 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 363  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19457242 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19457143  T
Q  364 aaat 367  Q
    ||||    
T  19457142 aaat 19457139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 164 - 367
Target Start/End: Original strand, 19523736 - 19523939
Alignment:
Q  164 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 263  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19523736 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19523835  T
Q  264 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 363  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19523836 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19523935  T
Q  364 aaat 367  Q
    ||||    
T  19523936 aaat 19523939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 170 - 367
Target Start/End: Complemental strand, 19354995 - 19354801
Alignment:
Q  170 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 269  Q
    ||||||||| |||||||||||||||||||  ||||||| | ||  ||| ||||||||||| |||||||||| |||||||| |||||| |||  |||||||    
T  19354995 agacaatacatgccttgtttagaacataggttggaatttgcatccaatttatcacctggcctcaaactatcatttgttgctttaacacaaatgctagtag 19354896  T
Q  270 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 367  Q
    || |   |||||||||||||| ||||||||| | || |||||||||||||  |||||||||||||||  ||||||||||||| |||| ||||||||||    
T  19354895 tgtt---ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaatattgtttaaaaaagaagagaaat 19354801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 19376120 - 19375930
Alignment:
Q  177 acttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtggtact 276  Q
    ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| ||| ||  |    
T  19376120 acttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcagtagtgtt 19376021  T
Q  277 ccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 367  Q
    |||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||  |||||||||||||||||| ||||||||||    
T  19376020 ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaatattgtttcaaaaagaagagaaat 19375930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 170 - 345
Target Start/End: Original strand, 19173419 - 19173597
Alignment:
Q  170 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagt-- 267  Q
    |||||| ||||||||||||||||||||| | |||| || ||||| ||||||||||||||||||||||||||  ||||||| |||||| ||| | ||||      
T  19173419 agacaaaacttgccttgtttagaacataacttggatttcgaattcaatgtatcacctggcttcaaactatcacttgttgctttaacacaaatattagtag 19173518  T
Q  268 -agtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaata 345  Q
     ||| ||| ||||||||||||||||||||||||| | || |||||||||||||  |||||||||||||||  |||||||    
T  19173519 cagttgtattccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaata 19173597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 276 - 395
Target Start/End: Complemental strand, 19373581 - 19373462
Alignment:
Q  276 tccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgtactcac 375  Q
    ||||||||||||||||||||||||| | || ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||| |||| |     
T  19373581 tccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaatattgtttcaaaaagaagagaaatatactgat 19373482  T
Q  376 caaacccgaaggagaataat 395  Q
    | ||||||||||||||||||    
T  19373481 cgaacccgaaggagaataat 19373462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 172 - 367
Target Start/End: Complemental strand, 19404256 - 19404064
Alignment:
Q  172 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 271  Q
    ||||||||| |||||||||||||||||  ||||||| | ||  ||| |||||||||||||||||||||| ||| |||| |||||| |||  ||||| |||    
T  19404256 acaatacttaccttgtttagaacataggttggaatttgcatccaatttatcacctggcttcaaactatcatttattgctttaacacaaatgctagtcgtg 19404157  T
Q  272 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 367  Q
     |   |||||||||||||| ||||||||| | || |||||||||||||  ||| |||||||| ||  |||||||||||||||||| ||||||||||    
T  19404156 tt---ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaaacttatcatcattgatgaatattgtttcaaaaagaagagaaat 19404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 367
Target Start/End: Complemental strand, 19448041 - 19447846
Alignment:
Q  172 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 271  Q
    |||| ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| |       
T  19448041 acaaaacttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcaaca 19447942  T
Q  272 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 367  Q
    ||  ||||||||||||||| ||||||||| | |  |||||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  19447941 gtgttccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaat 19447846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 367
Target Start/End: Original strand, 19533035 - 19533230
Alignment:
Q  172 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 271  Q
    |||| ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| |       
T  19533035 acaaaacttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcaaca 19533134  T
Q  272 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 367  Q
    ||  ||||||||||||||| ||||||||| | |  |||||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  19533135 gtgttccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaat 19533230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 19376300 - 19376236
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatct 82  Q
    ||||||||| |||  ||||||||||||||||||||||||| |||||||||| ||||| |||||||    
T  19376300 gtttcctattttgtgattctattttgagcacaccagagtagtctagtgatagaactgctgaatct 19376236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 19410490 - 19410434
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg 74  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  19410490 gtttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactg 19410434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 19457509 - 19457453
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg 74  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  19457509 gtttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactg 19457453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 19468341 - 19468385
Alignment:
Q  169 aagacaatacttgccttgtttagaacatagcgtggaattggaatt 213  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  19468341 aagacaaaacttgccttgtttagaacatagcgtggaattggaatt 19468385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 19523569 - 19523625
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg 74  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  19523569 gtttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactg 19523625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 19355151 - 19355043
Alignment:
Q  20 ttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatcttcttctaagtcaaaggggtgatttctatcataaaacc 119  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||| ||||      | || ||| | ||| |||||||||||||| | ||    
T  19355151 ttcctattttgaaattctattttgagcacaccagagtagtctagtgatagaactgctgaa------tatatgtctatgggttgatttctatcatacatcc 19355058  T
Q  120 acactactgtgccat 134  Q
    ||||||||| |||||    
T  19355057 acactactgggccat 19355043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 19469938 - 19469993
Alignment:
Q  19 tttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg 74  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||    
T  19469938 tttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactg 19469993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 19540862 - 19540917
Alignment:
Q  19 tttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg 74  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||    
T  19540862 tttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactg 19540917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 19591836 - 19591781
Alignment:
Q  19 tttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg 74  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||    
T  19591836 tttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactg 19591781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 19337131 - 19337069
Alignment:
Q  20 ttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatct 82  Q
    ||||||| |||| ||||||||||||| ||||||||||| |||||||||| ||||| |||||||    
T  19337131 ttcctattttgaaattctattttgagtacaccagagtagtctagtgatagaactgctgaatct 19337069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 19344837 - 19344742
Alignment:
Q  33 attctattttgagcacaccagagtaatctagtgataaaactgttgaatcttcttctaagtcaaaggggtgatttctatcataaaaccacactactgtgcc 132  Q
    |||||||||||||||||||||| ||||||||||||| ||||| ||||      | |||||||| ||  |||||||||||||| | ||||||||||| |||    
T  19344837 attctattttgagcacaccagaataatctagtgatagaactgctgaa------tttaagtcaatggaatgatttctatcatacatccacactactgcgcc 19344744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 19448197 - 19448135
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat 80  Q
    ||||||||| |||  |||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  19448197 gtttcctattttgtgattctattttgagcacaccagaataatctagtgatagaactgctgaat 19448135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 19532879 - 19532941
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat 80  Q
    ||||||||| |||  |||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  19532879 gtttcctattttgtgattctattttgagcacaccagaataatctagtgatagaactgctgaat 19532941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 19468998 - 19469108
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatcttcttctaagtcaaaggggtgatttctatcataaaa 117  Q
    ||||||||| |||  ||||||||||||||||||||||||| |||| ||||| ||||| ||||      | |||||||| ||  |||||| ||||||| |     
T  19468998 gtttcctattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaa------tttaagtcaatggaatgatttatatcatacat 19469091  T
Q  118 ccacactactgtgccat 134  Q
    |||||||||||||||||    
T  19469092 ccacactactgtgccat 19469108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 19185115 - 19185068
Alignment:
Q  33 attctattttgagcacaccagagtaatctagtgataaaactgttgaat 80  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||    
T  19185115 attctattttgagcacaccagagtagtctagtgatagaactgctgaat 19185068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 19287393 - 19287338
Alignment:
Q  19 tttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg 74  Q
    |||||||| |||| ||||||||||||||||||||||||| |||| ||||| |||||    
T  19287393 tttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactg 19287338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 19555919 - 19555981
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat 80  Q
    ||||||||| |||  ||||||||||||||||||||||||| |||| ||||| ||||| |||||    
T  19555919 gtttcctattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaat 19555981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 19173246 - 19173356
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatcttcttctaagtcaaaggggtgatttctatcataaaa 117  Q
    ||||||||| |||  ||| |||||||||||||||||| ||||||||||| | ||||| ||||      | |||||||| ||  |||||||||||||| |     
T  19173246 gtttcctattttgtgattgtattttgagcacaccagaataatctagtgaaagaactgctgaa------tttaagtcaatggaatgatttctatcatacat 19173339  T
Q  118 ccacactactgtgccat 134  Q
    ||||||||||| |||||    
T  19173340 ccacactactgcgccat 19173356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 19469168 - 19469217
Alignment:
Q  164 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaatt 213  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||||||||    
T  19469168 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaatt 19469217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 19390274 - 19390214
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttga 78  Q
    ||||||||| |||| ||||||||||||||||||||| ||| | || ||||||||||| |||    
T  19390274 gtttcctattttgagattctattttgagcacaccagtgtagtttaatgataaaactgctga 19390214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 19489784 - 19489728
Alignment:
Q  18 gtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg 74  Q
    ||||||||| |||  |||||||||||||| ||||||||||  |||||||||||||||    
T  19489784 gtttcctattttgtgattctattttgagcgcaccagagtaggctagtgataaaactg 19489728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 19504496 - 19504544
Alignment:
Q  20 ttcctatcttgacattctattttgagcacaccagagtaatctagtgata 68  Q
    ||||||| |||| ||||||||||||||||||||||||| |||| |||||    
T  19504496 ttcctattttgaaattctattttgagcacaccagagtagtctaatgata 19504544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 16004341 - 16004306
Alignment:
Q  33 attctattttgagcacaccagagtaatctagtgata 68  Q
    ||||||||||||||||||||||||| ||||||||||    
T  16004341 attctattttgagcacaccagagtagtctagtgata 16004306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 19458256 - 19458303
Alignment:
Q  33 attctattttgagcacaccagagtaatctagtgataaaactgttgaat 80  Q
    ||||||||||||||||||||||||| |||| ||||| ||||| |||||    
T  19458256 attctattttgagcacaccagagtagtctaatgatagaactgctgaat 19458303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 19468184 - 19468231
Alignment:
Q  33 attctattttgagcacaccagagtaatctagtgataaaactgttgaat 80  Q
    ||||||||||||||||||||||||| |||| ||||| ||||| |||||    
T  19468184 attctattttgagcacaccagagtagtctaatgatagaactgctgaat 19468231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 19404416 - 19404321
Alignment:
Q  33 attctattttgagcacaccagagtaatctagtgataaaactgttgaatcttcttctaagtcaaaggggtgatttctatcataaaaccacactactgtgcc 132  Q
    ||||||||||||||||||| ||||| ||||| |||| ||||| ||||      |||||||||| ||  |||||||||||||| | ||| ||||||| |||    
T  19404416 attctattttgagcacaccggagtagtctagcgatagaactgctgaa------tctaagtcaatggaatgatttctatcatacatccatactactgcgcc 19404323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University