View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_high_15 (Length: 367)
Name: NF4686_high_15
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 36938158 - 36938495
Alignment:
| Q |
17 |
cataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttg |
116 |
Q |
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| T |
36938158 |
cataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttg |
36938257 |
T |
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| Q |
117 |
gcacaccccaattttccactacctgttccaagagatggaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36938258 |
gcacaccccaattttccactacctgttccaagagatggaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatc |
36938357 |
T |
|
| Q |
217 |
cctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaac |
316 |
Q |
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| T |
36938358 |
cctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaac |
36938457 |
T |
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| Q |
317 |
ccaatggttcactagcttggacgaaagaggatatgatg |
354 |
Q |
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| T |
36938458 |
ccaatggttcactagcttggacgaaagaggatatgatg |
36938495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 21 - 354
Target Start/End: Original strand, 36948409 - 36948739
Alignment:
| Q |
21 |
aacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcac |
120 |
Q |
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||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||| |||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
36948409 |
aacacaagtgaagtcacagatttcactactcgtttctcattttctatcaacacccccaacaaaagttatcatggagatggcatcaccttctatttggcac |
36948508 |
T |
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| Q |
121 |
accccaattttccactacctgttccaag-agatggaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccct |
219 |
Q |
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| T |
36948509 |
gccccaattttcc--ta--tgtcccaaatagatggaagtggtatcggtctagcgagccgtgttcaattgagtaatccaaattacacaaaagaaaatccat |
36948604 |
T |
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| Q |
220 |
ttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaaccca |
319 |
Q |
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|||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||| ||||| ||| | |||| || || |
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| T |
36948605 |
ttgtagctgtggaatttgatacatttgttaatgactgggatcctaaatatgatcatgttgggattgatgttaattctatcagcactaatcacactacaca |
36948704 |
T |
|
| Q |
320 |
atggttcactagcttggacgaaagaggatatgatg |
354 |
Q |
| |
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||||||||||||| |||| |||||||||||||||| |
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| T |
36948705 |
atggttcactagcatggatgaaagaggatatgatg |
36948739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 36958539 - 36958873
Alignment:
| Q |
17 |
cataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttg |
116 |
Q |
| |
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|||||| || || |||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| || |||||||||||| |
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| T |
36958539 |
cataaaaacaagcgaagtcacagatttcaatactcgtttctcatttactatcaacacccccaacaaaacccatcatgcagatggcatgaccttctatttg |
36958638 |
T |
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| Q |
117 |
gcacaccccaattttccactacctgttccaag-agatggaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaat |
215 |
Q |
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||||||||||||||||| | ||| |||| | ||||| | || || ||||| |||| |||||||| || |||| ||||||||||||||||| |
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| T |
36958639 |
gcacaccccaattttcc----catgtcccaaatatatggaggcggaatcggtcttgcgagccttgttcaattgagtaatccagattacacaaaagaaaat |
36958734 |
T |
|
| Q |
216 |
ccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaa |
315 |
Q |
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|| ||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | || | | |
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| T |
36958735 |
ccatttgtagctgtggaatttgatacatttgttaatgaatgggatcctaactatgatcatgttgggattgatgttaattctatcagcactaatcacgcta |
36958834 |
T |
|
| Q |
316 |
cccaatggttcactagcttggacgaaagaggatatgatg |
354 |
Q |
| |
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| ||||||||||||||| |||| |||||||||||||||| |
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| T |
36958835 |
cacaatggttcactagcatggatgaaagaggatatgatg |
36958873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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