View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_high_17 (Length: 314)
Name: NF4686_high_17
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 30522215 - 30522496
Alignment:
| Q |
14 |
agattatactataggaaaagggacagccagctgacaaaggcagtgaatttttggaagtttgagcagtcgtctcgttgtgggctgacttttcctgcaaaaa |
113 |
Q |
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| T |
30522215 |
agattatactataggaaaagggacagccagctgacaaaggcagtgaatttttggaagtttgagcagtcgtctcgttgtgggctgacttttcctgcaaaaa |
30522314 |
T |
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| Q |
114 |
atttctcatccataatcataatctaatgatgttttcctttctaacattgtttaatataaaatctttggaatttagttgttgaactgtggtggccttagaa |
213 |
Q |
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| T |
30522315 |
ttttctcatccataatcataatctaatgatgttttcctttctaacattgtttaatataaaatctttggaatttagttgttgaactgtggtggccttagaa |
30522414 |
T |
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| Q |
214 |
tattctcaccnnnnnnnnnnnnnnnnnnnnnnaaaggtttcaactttcaaggccttgtgagattcctgttcaaactccttag |
295 |
Q |
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| T |
30522415 |
tattctcaccctctccaactctctcctctctcaaaggtttcaactttcaaggccttgtgagattcctgttcaaactccttag |
30522496 |
T |
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Back To:
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 38899309 - 38899469
Alignment:
| Q |
35 |
gacagccagctgacaaaggcagtgaatttttggaagtttgagcagtcgtctcgttgtgggctgacttttcctgcaaaaaatttctc---atccataatca |
131 |
Q |
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|||||||| |||||||||||||||||| ||||||||| ||| || ||||| ||||||||||||||||| | ||||||| || |||| |||||| |
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| T |
38899309 |
gacagccaactgacaaaggcagtgaatatttggaagtgagagtagacgtctacttgtgggctgacttttctag--aaaaattggtccaaatccttaatca |
38899406 |
T |
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| Q |
132 |
taatctaatgatgttttcctttctaacattgtttaatataaaatctttggaatttagttgttga |
195 |
Q |
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| T |
38899407 |
taatctaatgattttttcctttctaacattgtttaaaat-aaatttttggattttagttgttga |
38899469 |
T |
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