View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_high_18 (Length: 312)
Name: NF4686_high_18
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 30138088 - 30138379
Alignment:
| Q |
7 |
ggctaacatgtacgatgtcttaatgcaataactgttgagagataccacaaattttcgtaatcaaggtggggaaaacagtatataaaattttatcgtagtg |
106 |
Q |
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| T |
30138088 |
ggctaacatgtacgatgtcttaatgcaataactgttgagagataccacaaattttcgtaatcaaggtggggaaaacagtatataaaattttatcgtagtg |
30138187 |
T |
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| Q |
107 |
gtttggacgtgagaattttatacgtgcattaatatcaattctatga-tttttccgttctacatttcccattaagtcgtattttttataaggaacggacaa |
205 |
Q |
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| T |
30138188 |
gtttggacgtgagaattttatacgtgcattattatcaattctatgatttttttcgttctacatataccattaagtcgtattttttataaggaacggacaa |
30138287 |
T |
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| Q |
206 |
tctgacttaatgggaaatgtagaagggaaaaatcatataagaaaataatacaggaaatgatagttcagacacatccatatgtatctattatc |
297 |
Q |
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| T |
30138288 |
tttgacttaatgggaaatgtagaagggaaaaatcatataagaaaataatacaggaaatgatagttcagacacatccatatgcatctattatc |
30138379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 30138324 - 30138291
Alignment:
| Q |
148 |
tatgatttttccgttctacatttcccattaagtc |
181 |
Q |
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| T |
30138324 |
tatgatttttcccttctacatttcccattaagtc |
30138291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 39130405 - 39130347
Alignment:
| Q |
192 |
taaggaacggacaatctgacttaatgggaaatgtagaag-ggaaaaatcatataagaaa |
249 |
Q |
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| T |
39130405 |
taaggaacggacaatctgacttaatgggaaaagtagaagcgaaaaaatcatataagaaa |
39130347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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