View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_high_20 (Length: 268)
Name: NF4686_high_20
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 35035405 - 35035543
Alignment:
| Q |
15 |
aataacaagacaccactaaatcacaataagatcaaact--aatacgaccaaatcgcagattgccacaggtaactagannnnnnnnnaagtggtaaagaat |
112 |
Q |
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| T |
35035405 |
aataacaagacaccactaaatcacaataagatcaaactagaatacgaccaaatcgcagattgccacaggtaactaga-ttttttttaagtggtaaagaat |
35035503 |
T |
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| Q |
113 |
gtcttcacgtgaattgtattaaacgtaggaacagttccat |
152 |
Q |
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| T |
35035504 |
gtcttcacgtgaattgtattaaacgtaggaacagttccat |
35035543 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 35035578 - 35035613
Alignment:
| Q |
198 |
acatgcagagaagccaacatctgaacaatcctccct |
233 |
Q |
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| T |
35035578 |
acatgcagagaagccaacatctgaacaatcctccct |
35035613 |
T |
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