View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_high_26 (Length: 233)
Name: NF4686_high_26
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_high_26 |
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| [»] scaffold1207 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 11133527 - 11133314
Alignment:
| Q |
1 |
attgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
11133527 |
attgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacattttgctgctgaggaaatatca |
11133428 |
T |
|
| Q |
101 |
tcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11133427 |
tcaatggtattgacaaaaattcgtgagattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgc |
11133328 |
T |
|
| Q |
201 |
aacgccaagctact |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
11133327 |
aacgccaagctact |
11133314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 11197253 - 11197050
Alignment:
| Q |
4 |
gtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatca |
103 |
Q |
| |
|
|||||| || ||||||||||| | | | ||||||||||||| |||||||| || || |||| |||||||| |||||| ||||||| |||| ||||| |
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| T |
11197253 |
gtggcccttcaaagtaattggcgacctcaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatctcatcg |
11197154 |
T |
|
| Q |
104 |
atggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaac |
203 |
Q |
| |
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||||||||| ||||||| || || || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
11197153 |
atggtattggcaaaaatggccgagatagctgaagcttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatgactcacaac |
11197054 |
T |
|
| Q |
204 |
gcca |
207 |
Q |
| |
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|||| |
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| T |
11197053 |
gcca |
11197050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 11156772 - 11156597
Alignment:
| Q |
32 |
aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg |
131 |
Q |
| |
|
||||||||||||| |||||||| || || || | |||||||| |||||| ||||||| |||| ||||| ||||||||| ||||||| || || | |
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| T |
11156772 |
aatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaatctcatcgatggtattggcaaaaatggccgagatag |
11156673 |
T |
|
| Q |
132 |
cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacgcca |
207 |
Q |
| |
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| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |
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| T |
11156672 |
ctgaagtttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatgactcacaacgcca |
11156597 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 11171102 - 11170897
Alignment:
| Q |
2 |
ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat |
101 |
Q |
| |
|
||||||||||| ||||||||||||| | | ||||||||||||| |||||||| || || |||| ||||||||||||||| ||||||| |||| |||| |
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| T |
11171102 |
ttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaaacattttgctgctgaagaaatctcat |
11171003 |
T |
|
| Q |
102 |
caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca |
201 |
Q |
| |
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| ||||||||| ||||| || || || |||||| | ||||||||||| |||| ||||||| ||||||||||| ||||| |||||||||||||| || |
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| T |
11171002 |
ccatggtattggtgaaaatgcgcgagatagcagaaaccttccttggatcaatagtggaggatgttgttataactgtgcctgcatactttaatgactcaca |
11170903 |
T |
|
| Q |
202 |
acgcca |
207 |
Q |
| |
|
|||||| |
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|
| T |
11170902 |
acgcca |
11170897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 11276486 - 11276281
Alignment:
| Q |
2 |
ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat |
101 |
Q |
| |
|
||||||||||| ||||||||||||| | | ||||||||||||| |||||||| || || |||| |||||||| |||||| ||||||| |||| |||| |
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|
| T |
11276486 |
ttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttactgctgaagaaatctcat |
11276387 |
T |
|
| Q |
102 |
caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca |
201 |
Q |
| |
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| ||||||||| | ||||| || || || ||||||| | |||||||| ||||||| ||||||| ||||||||||| ||||| |||||||||||||| || |
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| T |
11276386 |
ccatggtattggcgaaaatgcgcgagatagcagaagccttccttggattaacagtggaggatgttgttataactgtgcctgcatactttaatgactcaca |
11276287 |
T |
|
| Q |
202 |
acgcca |
207 |
Q |
| |
|
||||| |
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|
| T |
11276286 |
gcgcca |
11276281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 11209924 - 11209719
Alignment:
| Q |
2 |
ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat |
101 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||||||||||||| |||||||| || || || | |||||||| |||||| ||||||| |||| |||| |
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| T |
11209924 |
ttgtggccattcaaagtaattggcgacctaaatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaatctcat |
11209825 |
T |
|
| Q |
102 |
caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca |
201 |
Q |
| |
|
| ||||||||| | ||||| || || | ||||||| | |||||||||||||||| | ||||| ||||||||||| ||||| |||||||||||||| || |
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|
| T |
11209824 |
ccatggtattggcgaaaatgcgagagacagcagaagccttccttggatcaacagtggatgatgttgttataactgtgcctgcatactttaatgactcaca |
11209725 |
T |
|
| Q |
202 |
acgcca |
207 |
Q |
| |
|
|||||| |
|
|
| T |
11209724 |
acgcca |
11209719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 11200394 - 11200222
Alignment:
| Q |
32 |
aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg |
131 |
Q |
| |
|
||||||||||||| |||||||| || || |||| |||||||| |||||| |||| || |||| ||||| ||||||||||||||||| | || |||| |
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|
| T |
11200394 |
aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg |
11200295 |
T |
|
| Q |
132 |
cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacg |
204 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| ||||||| ||| ||| | ||||||||||| || ||||| |
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|
| T |
11200294 |
ctgaagcttaccttggatcaacagtgaaggatgttgttataattgtgcctacatactttaatgattcacaacg |
11200222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 194
Target Start/End: Complemental strand, 11161651 - 11161489
Alignment:
| Q |
32 |
aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg |
131 |
Q |
| |
|
||||||||||||| |||||||| || || |||| |||||||| |||||| |||| || |||| ||||| ||||||||||||||||| | || |||| |
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|
| T |
11161651 |
aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg |
11161552 |
T |
|
| Q |
132 |
cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatg |
194 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||| |
|
|
| T |
11161551 |
ctgaagcttaccttggatcaacagtgaaggatgttgttataattgtgcctacatactttaatg |
11161489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 11241082 - 11241287
Alignment:
| Q |
2 |
ttgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcat |
101 |
Q |
| |
|
|||||||| || ||||||||||| | | | |||||||||| || | | |||| || || |||| |||||||| ||||| ||||||| |||| |||| |
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|
| T |
11241082 |
ttgtggcccttcaaagtaattggcgacctgaatgacaaacacatgactattgttaactataatgacgaggaaaagcatttcgctgctgaagaaatctcat |
11241181 |
T |
|
| Q |
102 |
caatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgca |
201 |
Q |
| |
|
| ||||||||| ||||||| | || || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |
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|
| T |
11241182 |
cgatggtattggcaaaaatggccaagatagctgaagcttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatgactcaca |
11241281 |
T |
|
| Q |
202 |
acgcca |
207 |
Q |
| |
|
|||||| |
|
|
| T |
11241282 |
acgcca |
11241287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 1381 - 1205
Alignment:
| Q |
38 |
aaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaag |
137 |
Q |
| |
|
||||||| |||||||| || || |||| |||||||| |||||| ||||||| |||| ||||| ||||||||| | ||||| || || | ||||||| |
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|
| T |
1381 |
aaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatctcatccatggtattggcgaaaatgcgcgagacagcagaag |
1282 |
T |
|
| Q |
138 |
tttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacgccaagctact |
214 |
Q |
| |
|
| |||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
1281 |
ccttccttggatcaacagtggaggatgttgttataactgtgcctgcatactttaatgactcacaacgccaatctact |
1205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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