View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_low_13 (Length: 375)
Name: NF4686_low_13
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 42213087 - 42212748
Alignment:
| Q |
20 |
gaacatggtacatatacatgcgatggaatggcaatggaattaaatggtgtatgttgtaattgaacttgattagatgacggaaggatggagggccaaaata |
119 |
Q |
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| T |
42213087 |
gaacatggtacatatacatgcgatggaatggcgatggaattaaatggtgtatgttgtaattgaacttgattagatgacggaaggatggagggccaaaata |
42212988 |
T |
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| Q |
120 |
actgtctaactggaaaatggttataaagaaaccatggactagtaccaggtgcgggtgatacctcggacatagataactcctgcacaacaggagttttctc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212987 |
actgtctaactggaaaatggttataaagaaaccatggactagtaccaggtgcgggtgatacctcggacatagataactcctgcacaacaggagttttctc |
42212888 |
T |
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| Q |
220 |
cacttcagtgtttattgacttagctatctacaaacagaagcaaatgtcagttttccggtatatatttacttttgcaaacaaaaagagttatcccatactc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42212887 |
tacttcagtgtttattgacttagctatctacaaacagaagcaaatgtcagttttccggtatatatttacttttgctaacaaaaagagttatcccatactc |
42212788 |
T |
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| Q |
320 |
aaagatttcttgcatagaaaaacatcttacttgtgccttt |
359 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
42212787 |
aaagatttcttgcatagaaaaacatcttacttgtgtcttt |
42212748 |
T |
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