View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_low_14 (Length: 371)
Name: NF4686_low_14
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 45512936 - 45513299
Alignment:
| Q |
1 |
agtggtattcgtctcaatgacaagcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgtctggatgtagagttgacaatt |
100 |
Q |
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| T |
45512936 |
agtggtattcgtctcaatgacacgcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgtctggatgtagagttgacaatt |
45513035 |
T |
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| Q |
101 |
cactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtccgattcctgagtcttttggaaa |
200 |
Q |
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| T |
45513036 |
cactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtccgattcctgagtcttttggaaa |
45513135 |
T |
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| Q |
201 |
catgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggttcagtcactttgagaaacttacccttcttgacctttct |
300 |
Q |
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| T |
45513136 |
catgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggttcggtcactttgagaaacttacccttcttgacctttct |
45513235 |
T |
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| Q |
301 |
tacaatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggttcatctca |
364 |
Q |
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| T |
45513236 |
tataatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggtgcatctca |
45513299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 45513524 - 45513624
Alignment:
| Q |
163 |
aatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggt |
262 |
Q |
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| T |
45513524 |
aatgagcttcatggtccaattccaggggtttttcgaaacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggt |
45513623 |
T |
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| Q |
263 |
t |
263 |
Q |
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| T |
45513624 |
t |
45513624 |
T |
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