View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686_low_2 (Length: 596)

Name: NF4686_low_2
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686_low_2
NF4686_low_2
[»] chr2 (3 HSPs)
chr2 (18-585)||(41380519-41381090)
chr2 (125-224)||(43855153-43855252)
chr2 (181-225)||(43856685-43856729)
[»] chr6 (7 HSPs)
chr6 (125-561)||(7970105-7970554)
chr6 (125-561)||(8043155-8043604)
chr6 (125-561)||(8033219-8033668)
chr6 (125-228)||(7977223-7977326)
chr6 (18-70)||(7970590-7970642)
chr6 (18-70)||(8043067-8043119)
chr6 (299-384)||(7976908-7976993)
[»] chr7 (2 HSPs)
chr7 (160-225)||(14197281-14197346)
chr7 (297-367)||(14197141-14197211)
[»] chr8 (1 HSPs)
chr8 (309-364)||(34410575-34410630)


Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Complemental strand, 41381090 - 41380519
Alignment:
Q  18 taatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatgtattttcttttggttttatgtgtttgcattgn 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41381090 taatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatgtattttcttttggttttatgtgtttgcattgt 41380991  T
Q  118 nnnnnnncagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatatt 217  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41380990 tttttttcagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatatt 41380891  T
Q  218 ttgtaagccatgagaaattgtaaacataattactaaattttcttagataatcataatcttactcatcttttcattctaataaattttcagcttccatgta 317  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41380890 ttgtaagccatgagaaattgtaaatataattactaaattttcttagataatcataatcttactcatcttttcattctattaaattttcagcttccatgta 41380791  T
Q  318 tcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagnnnnnn 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  41380790 tcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagtttttt 41380691  T
Q  418 naataatgtta----taagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggag 513  Q
     ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  41380690 taataatgttataattaagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggag 41380591  T
Q  514 cattgaggagtattatacttgaagccaagacctaccagttttactcttaaactccttggcaatgatgatgtc 585  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  41380590 cattgaggagtattatccttgaagccaagtcctaccagttttactcttaaactccttgacaatgatgatgtc 41380519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 43855153 - 43855252
Alignment:
Q  125 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 224  Q
    ||||||| ||||||||  | | ||| ||||||||||| |||||||  ||||| ||||||||||||||||| || |||||||| |||||||||||||||||    
T  43855153 cagcattcacaatgtttgtgggcataaccttcccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag 43855252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 43856729 - 43856685
Alignment:
Q  181 ttttttggaggatttgcttttgctccaacaacatattttgtaagc 225  Q
    |||||||||||||||| |||||||||||  ||||| |||||||||    
T  43856729 ttttttggaggatttgtttttgctccaatgacatactttgtaagc 43856685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 125 - 561
Target Start/End: Complemental strand, 7970554 - 7970105
Alignment:
Q  125 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 224  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  7970554 cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgcgccaacaacatattttgtaag 7970455  T
Q  225 ccatgagaaa-ttgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatg 322  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||    
T  7970454 ccatgagaaaattgtaaatataattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtatcatg 7970355  T
Q  323 tggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgca----ttttttctctaag------- 411  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |    |||||||| ||||           
T  7970354 tggcttaaactctacaaaccaaaaagattcagcttatcttggtggattaattgggtaggtatctttaattattgtattttttttttctttaagttcttga 7970255  T
Q  412 nnnnnnnaataatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattgg 511  Q
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||| |||||||||||||    
T  7970254 ataatttattaatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattgg 7970155  T
Q  512 agcattgaggagtattatacttgaagccaagacctaccagttttactctt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970154 agcattgaggagtattatacttgaagccaagacctaccagttttactctt 7970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 125 - 561
Target Start/End: Original strand, 8043155 - 8043604
Alignment:
Q  125 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 224  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  8043155 cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgctccagcaacatattatgtaag 8043254  T
Q  225 ccatgagaaattgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgt 323  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||||||| || | |||||||||||| ||||||||||||||||||||||  |||    
T  8043255 ccatgagaaattgtaaatgtaattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtattgtgt 8043354  T
Q  324 ggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcatttt----ttctctaag-------n 412  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    |||| ||||            
T  8043355 ggcttaaactctacaaaccaaagagattcagcttgtcttggtggattaattgggtaggcatctttaattattgtatttttttcttctttaagttcttgaa 8043454  T
Q  413 nnnnnnaataatg-ttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattgg 511  Q
          | ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||  |||||||| ||||||||||||||||    
T  8043455 taatttattaatgtttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattgg 8043554  T
Q  512 agcattgaggagtattatacttgaagccaagacctaccagttttactctt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8043555 agcattgaggagtattatacttgaagccaagacctaccagttttactctt 8043604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 125 - 561
Target Start/End: Original strand, 8033219 - 8033668
Alignment:
Q  125 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 224  Q
    ||||||| ||||||||| | || ||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||    
T  8033219 cagcattcacaatgttcattgctattacattcccatttttcggtggccttctaggattttttggaggattcgcttttgctccaacaacatattttgtaag 8033318  T
Q  225 ccatgagaaattgtaaacataattactaaattttctta-gataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgt 323  Q
    |||||| |||||||||| ||||| |||  ||||||||| ||| |||||||| || |||||||||||||| || || | ||||||||||||||||||||||    
T  8033319 ccatgaaaaattgtaaatataatcactggattttcttaggattatcataattttgctcatcttttcattatattaca-tttcagcttccatgtatcatgt 8033417  T
Q  324 ggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctcta----------agnn 413  Q
    |||| |  || ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  | |||||||||          |       
T  8033418 ggctaatcctttacaaaccaaagagattcagcttctcttggtggactaattgggtaggtatctttaattattgtttgttttctctatcaactttataata 8033517  T
Q  414 nnnnnaataatgttataagcacatgtttaa--tatttgctcca-tatattacagatatgtattgttcttggggttagtataatgattctagcacccattg 510  Q
          ||| ||||||| ||||||||||||  | ||||||| | | | ||||||||| |||||||| ||||  |  ||||||||||| | ||||||||||    
T  8033518 taatttatattgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggcacccattg 8033617  T
Q  511 gagcattgaggagtattatacttgaagccaagacctaccagttttactctt 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8033618 gagcattgaggagtattatacttgaagccaagacctaccagttttactctt 8033668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 7977326 - 7977223
Alignment:
Q  125 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 224  Q
    ||||||| ||||||||| | || ||||| ||||||||||| | |||||| || || ||||||||||| ||||||||||||||||||||||| ||||||||    
T  7977326 cagcattcacaatgttcattgctattacattcccatttttcgatggccttctagggttttttggagggtttgcttttgctccaacaacatactttgtaag 7977227  T
Q  225 ccat 228  Q
    ||||    
T  7977226 ccat 7977223  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 7970642 - 7970590
Alignment:
Q  18 taatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaa 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  7970642 taatgtatacgtgggtaagtgaaataaagtagtgtacaactttgattttttaa 7970590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 8043067 - 8043119
Alignment:
Q  18 taatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaa 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  8043067 taatgtatacgtgggtaagtgaaataaagtagtgtacaactttgattttttaa 8043119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 7976993 - 7976908
Alignment:
Q  299 aattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtat 384  Q
    ||||||||||||||||||||||||||||||  | ||||||| ||||  | |||| ||||||| ||||||  |||||||||| ||||    
T  7976993 aattttcagcttccatgtatcatgtggctttcaatctacaaaccaagaaaattcggcttgtcatggtgggctaattgggtatgtat 7976908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 14197346 - 14197281
Alignment:
Q  160 ttttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagc 225  Q
    ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  14197346 tttttcggtggtctactaggattttttggtggatttgcttttgctccaacaacatactttgtaagc 14197281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 14197211 - 14197141
Alignment:
Q  297 taaattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtgg 367  Q
    ||||||||||||| ||||| || |||||||||  | ||||||| |||| ||||||||||||||||||||||    
T  14197211 taaattttcagctaccatgcataatgtggcttgcaatctacaaaccaaggagattcagcttgtcttggtgg 14197141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 34410575 - 34410630
Alignment:
Q  309 ttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttgg 364  Q
    ||||||||||||| ||||||||||| ||||| || ||||||||  |||||||||||    
T  34410575 ttccatgtatcatatggcttaaactttacaaacctaagagatttggcttgtcttgg 34410630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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