View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_low_21 (Length: 265)
Name: NF4686_low_21
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_low_21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 21602210 - 21602475
Alignment:
| Q |
1 |
aacatgtggtatgtacaatgtaagagatgaa-caaaaatagagattgtattgtcgggattaagattcattaactgagcttttaatgtccttcgattatat |
99 |
Q |
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| T |
21602210 |
aacatgtggtatgtgcagtgtaagagatgaaacaaaaatagagattgtattgtcgtgattaagcttcattaactgagcttctaatgcccttcgattatat |
21602309 |
T |
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| Q |
100 |
attccttctgtttcaattatacctccatctatccctattcatacgttggcatgtatgcctaatgaaacgaaatccattgtatcaatcaacttccgatgct |
199 |
Q |
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| T |
21602310 |
actccttatgtttaaattatacctccatctatccctattcatatgttgacatgtatgcataatgaagcgaaatccattgtatcaatcaacttccgttgct |
21602409 |
T |
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| Q |
200 |
gagcaaaatagattattgattccatggcatatgaccgaataattgatatgattgcaaacctaaccc |
265 |
Q |
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| T |
21602410 |
gagcaaaatagattattgattccatggcatatgaccggataattaatatgattgcaaacctaaccc |
21602475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 1819448 - 1819342
Alignment:
| Q |
123 |
tccatctatccctattcatacgttggcatgtatgcctaatgaaacgaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattcc |
222 |
Q |
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| T |
1819448 |
tccatctatcccttatcgtacgttgacatgtcttccaaatgaagc-aaatccattttatcaattaaatttcgatgttgagcaaaatagctaattgattca |
1819350 |
T |
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| Q |
223 |
atggcata |
230 |
Q |
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| T |
1819349 |
atgacata |
1819342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 31999026 - 31999098
Alignment:
| Q |
168 |
gaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattccatggcatatgaccgaata |
240 |
Q |
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| T |
31999026 |
gaaatccattgtatcaatcaacttccattgctgggcaaaatagctgattgatttgatggcgtatgaccgaata |
31999098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 6269415 - 6269467
Alignment:
| Q |
179 |
tatcaatcaacttccgatgctgagcaaaatagattattgattccatggcatat |
231 |
Q |
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| T |
6269415 |
tatcaatcaacttccaatgctgagaaaaatagtctattgattcaatgacatat |
6269467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 8934245 - 8934180
Alignment:
| Q |
168 |
gaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattccatggcatatga |
233 |
Q |
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| T |
8934245 |
gaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatggcatatga |
8934180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 11917621 - 11917674
Alignment:
| Q |
168 |
gaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattc |
221 |
Q |
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| T |
11917621 |
gaaatccattgtatcaatcgacttccgaacgtgagcaaaatagatgattgattc |
11917674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 2558989 - 2558834
Alignment:
| Q |
90 |
tcgattatatattccttctgtttcaattatacctccatctatccctattcatacgttggcatgtatgcctaatgaaacgaaatccattgtatcaatcaac |
189 |
Q |
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| T |
2558989 |
tcgattatatattccttctatttcaattattacttcacttatccctcatcatatgtttccatgtctggaaaacgacatgaaattcattttacctgtcgac |
2558890 |
T |
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| Q |
190 |
ttccgatgctgagcaaaatagattattgattccatggcatatgaccgaataattga |
245 |
Q |
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| T |
2558889 |
ttccgatgttgagcaaaatagacaattgattcaatgacatataaccgaatagttga |
2558834 |
T |
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