View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_low_24 (Length: 238)
Name: NF4686_low_24
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_low_24 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35035774 - 35036005
Alignment:
| Q |
1 |
aatattactacgagtgcagcgtcaatgacaccaccaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttccc |
100 |
Q |
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| T |
35035774 |
aatattactacgggtgcagcttcaatgacacc------accacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttccc |
35035867 |
T |
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| Q |
101 |
aacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttggga |
200 |
Q |
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| T |
35035868 |
aacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcacagtgcgtttaggtgttcatcgaactttagttgttagcagttggga |
35035967 |
T |
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| Q |
201 |
aattgctagacagtgtttcactgtaaacgacaaagcct |
238 |
Q |
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| T |
35035968 |
aattgctagacagtgtttcactgtaaacgacaaagcct |
35036005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 35019629 - 35019802
Alignment:
| Q |
61 |
tggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgc |
160 |
Q |
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| T |
35019629 |
tggccgttaatcggccacctccacctcttaggtggttcccaaccacctcacgtcaccttaggaaacttagccgacaaatacggacccatcttcaccgttc |
35019728 |
T |
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| Q |
161 |
gtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaa |
234 |
Q |
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| T |
35019729 |
gtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaa |
35019802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 35029720 - 35029894
Alignment:
| Q |
61 |
tggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccat-cttcaccgtg |
159 |
Q |
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||||| ||||| ||||||||||||||||||||||| ||||||| |||| | | ||||| |||||||||||||||||||||||| |||| ||||||||| |
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| T |
35029720 |
tggccgttaattggccacctccacctcttaggtgggtcccaaccacctcacgttaccttaggaaacttagccgacaaatacggacccatccttcaccgtt |
35029819 |
T |
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| Q |
160 |
cgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaa |
234 |
Q |
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| T |
35029820 |
cgtttaggtgttcacaaaaccttagttgtaagcagttatgaaatggtgaaacaatgtttcaccgtaaatgacaaa |
35029894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 35043986 - 35044158
Alignment:
| Q |
58 |
gcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccg |
157 |
Q |
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| T |
35043986 |
gcttggcctttgatcggccacctccacctcttaggtggatcccagccacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacct |
35044085 |
T |
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| Q |
158 |
tgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacga |
230 |
Q |
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| T |
35044086 |
ttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcactgtaaacga |
35044158 |
T |
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