View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_low_25 (Length: 233)
Name: NF4686_low_25
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_low_25 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 42390475 - 42390274
Alignment:
| Q |
14 |
catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatt |
113 |
Q |
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| T |
42390475 |
catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacactcctcatcacactcttaacaatt |
42390376 |
T |
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| Q |
114 |
tccacaatcatttgatacttatatatcttcttcttcaaatcaaagtcacagaacctacccccagggccgccatgccttcctatcttcggtaacctcctat |
213 |
Q |
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| T |
42390375 |
tccacaatcctttggtacttatatatcttcttcttcaaatcaaagtcccagaacctaccccaagggccgccgggccttcctatcttcggtaacctcctat |
42390276 |
T |
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| Q |
214 |
ct |
215 |
Q |
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|| |
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| T |
42390275 |
ct |
42390274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 42378883 - 42378729
Alignment:
| Q |
60 |
aaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatttccacaatcatttgatacttatatatcttcttcttcaaatcaaagt |
159 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||| ||| ||||||||| ||| |||||||||||| || |
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| T |
42378883 |
aaagattggtacaaaggtgacacaacaacactcctcatagcactcttaacaatttccataatcacttggtacttatatctctacttcttcaaatctaaaa |
42378784 |
T |
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| Q |
160 |
cacagaacctacccccagggccgccatgccttcctatcttcggtaacctcctatc |
214 |
Q |
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| T |
42378783 |
cccaaaacctaccaccaggcccaccgggctttcccatcttcggaaaccttctatc |
42378729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 42394841 - 42394704
Alignment:
| Q |
14 |
catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatt |
113 |
Q |
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| T |
42394841 |
catcatgattccactcacattttctttgttcaaaaaca------tgaaagattggtacaactgtgacaccacaacactactcataccactcttaaccatt |
42394748 |
T |
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| Q |
114 |
tccacaatcatttgatacttatatatcttcttcttcaaatcaaa |
157 |
Q |
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| T |
42394747 |
tccacaatcatttggtatatgtatctctacttcttcaaatcaaa |
42394704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 734 - 533
Alignment:
| Q |
14 |
catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
734 |
catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgataccacaacactcctcatcacactcttaacaatt |
635 |
T |
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| Q |
114 |
tccacaatcatttgatacttatatatcttcttcttcaaatcaaagtcacagaacctacccccagggccgccatgccttcctatcttcggtaacctcctat |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
634 |
tccacaatcatttagtacttatatatcttcttcttcaaatcaaagtcccataacctacccctagggccgccgggccttcctatcttcggtaacctcctat |
535 |
T |
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| Q |
214 |
ct |
215 |
Q |
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|| |
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|
| T |
534 |
ct |
533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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