View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686_low_27 (Length: 223)

Name: NF4686_low_27
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686_low_27
NF4686_low_27
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-206)||(75079-75284)
[»] chr6 (11 HSPs)
chr6 (50-206)||(29767140-29767296)
chr6 (51-206)||(29471945-29472100)
chr6 (52-206)||(29662710-29662863)
chr6 (63-206)||(29711721-29711864)
chr6 (53-206)||(29689164-29689317)
chr6 (50-205)||(29718345-29718503)
chr6 (44-206)||(29671272-29671434)
chr6 (53-197)||(29755645-29755789)
chr6 (116-195)||(29741318-29741397)
chr6 (52-206)||(29799866-29800020)
chr6 (52-192)||(28487468-28487608)
[»] chr3 (1 HSPs)
chr3 (63-206)||(618871-619014)
[»] scaffold0012 (1 HSPs)
scaffold0012 (50-206)||(208641-208797)
[»] chr8 (1 HSPs)
chr8 (50-197)||(12592388-12592538)
[»] chr1 (1 HSPs)
chr1 (55-137)||(5918325-5918407)


Alignment Details
Target: scaffold0007 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 75079 - 75284
Alignment:
Q  1 tacatttttctatacatatgatgagaagatacgtatgtcacgactgaaaatgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatact 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75079 tacatttttctatacatatgatgagaagatacgtatgtgacgactgaaaatgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatact 75178  T
Q  101 atggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattgaaagagaaaagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75179 atggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattgaaagagaaaagta 75278  T
Q  201 gcatga 206  Q
    ||||||    
T  75279 gcatga 75284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 29767296 - 29767140
Alignment:
Q  50 atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact 149  Q
    |||||||||||  |||||||||||||| ||| |||| | ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  29767296 atgtatcatttgcatctttttcatatgcaaatggaatacttcaatgataatatggacaaggcacttttagaaaataaatggaaccatgcagaggttgact 29767197  T
Q  150 ttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  29767196 ttggattcccattcatgtttagtggaatccatgtattgaaagagaaaagtagcatga 29767140  T

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Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 29471945 - 29472100
Alignment:
Q  51 tgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactt 150  Q
    |||||||| || |||||||||||||| ||| ||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29471945 tgtatcatctacatctttttcatatgcaaatggaaaaattgaataataatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactt 29472044  T
Q  151 tggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    ||| | ||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  29472045 tgggttcccattcatgtatagtggaatccatgtattgaaaaagaaaagtaacatga 29472100  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 29662863 - 29662710
Alignment:
Q  52 gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt 151  Q
    |||||||||| |||||||||||||| |||  ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29662863 gtatcatttacatctttttcatatgcaaactgaaaaattcaatgatgatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgacttt 29662764  T
Q  152 ggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    |||| |||||||  | || ||||||||||| |||||||||||||||||| |||||    
T  29662763 ggattcccattccagaat-gtggaatccatgtattgaaagagaaaagtaacatga 29662710  T

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Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 29711864 - 29711721
Alignment:
Q  63 atctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccatt 162  Q
    ||||||||||| || ||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||    
T  29711864 atctttttcatttgcaaatggaaaatttcaatgataatatagacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggattcccttt 29711765  T
Q  163 catgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    |  | |||||||||||||| |||||||||||||||||| |||||    
T  29711764 ccagaatagtggaatccatgtattgaaagagaaaagtaacatga 29711721  T

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Target: chr6; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 29689317 - 29689164
Alignment:
Q  53 tatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttg 152  Q
    ||||||||  |||||||||||||| ||  |||| | ||||| | || |||||| |||||||||||||||||||| ||||||||||||||| |||||||||    
T  29689317 tatcatttgcatctttttcatatgcaagtggaatacttcaatggtaatatggataaagcacttttagaaaataaatggaaccatgcagaggttgactttg 29689218  T
Q  153 gatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    ||| ||||||||||| ||||||||||||| ||||||||||||| |||| |||||    
T  29689217 gattcccattcatgtttagtggaatccatgtattgaaagagaagagtaacatga 29689164  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 29718503 - 29718345
Alignment:
Q  50 atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact 149  Q
    |||||||||||  |||||||||||||| ||| ||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | |    
T  29718503 atgtatcatttgcatctttttcatatgcaaacggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagagatttatt 29718404  T
Q  150 ttgg---atccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatg 205  Q
    ||||    ||  ||||||||||||||||| ||||| |||||||||| |||| |||||||    
T  29718403 ttggtgtctctgcattcatgtatagtggagtccatgtattgaaagaaaaaaatagcatg 29718345  T

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Target: chr6; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 29671434 - 29671272
Alignment:
Q  44 ctgaaaatgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagc 143  Q
    ||||| |||||||||||  |||||||||||||||||| |||||| || || |||| |||||| |||| |||||| ||||||| ||||||||||||||||     
T  29671434 ctgaatatgtatcatttgcatctttttcatatgaaaatggaaaactttaatgataatatggaaaaagtactttttgaaaatatgtggaaccatgcagagg 29671335  T
Q  144 ttgactttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    |||| |||||||  ||||||  | | |||||||| ||| ||| |||||||||||||| |||||    
T  29671334 ttgattttggattaccattccagaaaagtggaattcatgtatcgaaagagaaaagtaacatga 29671272  T

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Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 29755789 - 29755645
Alignment:
Q  53 tatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttg 152  Q
    ||||||||  |||||||||||||| ||| |||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||| ||  |||||    
T  29755789 tatcatttgcatctttttcatatgcaaatggaaaacttcaatgataatatggacaaagcactttcagaaaataagtggaaccatgcggaggttctctttg 29755690  T
Q  153 gatccccattcatgtatagtggaatccatatattgaaagagaaaa 197  Q
    ||| |  |||| |  | |||||||||||| |||||||||||||||    
T  29755689 gattcaaattccttaaaagtggaatccatgtattgaaagagaaaa 29755645  T

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Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 29741397 - 29741318
Alignment:
Q  116 ttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattgaaagagaa 195  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||| |||||||||||||    
T  29741397 ttagaaaataagtggaaccatgcagaggttgactttggattcccgttcatgtatagcggaatccatgtattgaaagagaa 29741318  T

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Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 29800020 - 29799866
Alignment:
Q  52 gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt 151  Q
    |||||||||  ||||||| |||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| || || |||||    
T  29800020 gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt 29799921  T
Q  152 ggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    |||| |  ||||    | |||||||||||| |||||||||  ||||||| |||||    
T  29799920 ggattcaaattccataaaagtggaatccatgtattgaaagctaaaagtaacatga 29799866  T

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Target: chr6; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 28487608 - 28487468
Alignment:
Q  52 gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt 151  Q
    |||||||||  ||||||| |||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| || || |||||    
T  28487608 gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt 28487509  T
Q  152 ggatccccattcatgtatagtggaatccatatattgaaaga 192  Q
    |||| |  ||||    | |||||||||||| ||||||||||    
T  28487508 ggattcaaattccataaaagtggaatccatgtattgaaaga 28487468  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 618871 - 619014
Alignment:
Q  63 atctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccatt 162  Q
    |||||||||||||| ||| | |  | ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||    
T  618871 atctttttcatatgcaaatgaagtacttcaatgataatatggacaaagcacttttagaaaataagtggaatcatgcagaggttgactttggattcccatt 618970  T
Q  163 catgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||    
T  618971 catgtatagtggaatccatgtattggaagagaaaagtaacatga 619014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 208797 - 208641
Alignment:
Q  50 atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact 149  Q
    |||||||||||  |||||||||||||| ||| |||||| ||||| || | ||||||||||||||| | ||||||||||||||| |||||||||||||| |    
T  208797 atgtatcatttgcatctttttcatatgcaaatggaaaacttcaatgaaaatatggacaaagcactctcagaaaataagtggaatcatgcagagcttgatt 208698  T
Q  150 ttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatga 206  Q
    |||||  | ||||| || | |||||||||||| |||||||||||| |||||||||||    
T  208697 ttggactctcattcctggaaagtggaatccatgtattgaaagagagaagtagcatga 208641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 12592388 - 12592538
Alignment:
Q  50 atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact 149  Q
    |||||||||||  |||||||||||||| ||| ||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | |    
T  12592388 atgtatcatttgcatctttttcatatgcaaatggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagaggtttatt 12592487  T
Q  150 ttgg---atccccattcatgtatagtggaatccatatattgaaagagaaaa 197  Q
    ||||    ||  ||||||||||||||||||||||| |||||||||| ||||    
T  12592488 ttggtgtctctgcattcatgtatagtggaatccatgtattgaaagataaaa 12592538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 5918407 - 5918325
Alignment:
Q  55 tcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatg 137  Q
    ||||||| || ||||||||||| |||  ||||||||||| |||  | ||||   |||||||||||||||| ||||||||||||    
T  5918407 tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatg 5918325  T

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